Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01047 ATGCCTATGTCCTTCATTTGTCTCTTTCTCAAACCCTCTCCACCTTCTCCTTTCTATAATACCCTTCCCTCTTACACTTTTATTCCTCACACACACAATATCCATCGATCTTTCACCATGGAAGAAGATTCCAAAAGCTCCAGCGAAGAAATTGATCGATCATCCGAACACAACAATGATGAGATGGGAACTGGAAGATCCTACGAGTGTGTGTTTTGCAGGAGAGGCTTCACAACAGCACAGGCTTTGGGAGGACACATGAACATACACAGAAAAGATAGAGCCAACAAGGCCAAACCTAATTTTCCTCCTTCGAGTTCAACCAAGGTTGACGAGAGTTATCACTATGCAGATCTTGGCCTATATTCTGCATCCAATCCAAGAGGGAATTACTATTCATCTCTTCCTGATCGAGAGGTAGACACTAATTACAACTATTGCCATCAATTGTATTTTCCTTCTCACACGTGTGGTGCCAGATCATCACCACCTTCACGTGTACAATATGGTGAGGTGTTGTGTGTGGAGAATCAAAGGGATCCTCAGCTTCTGTTTGGACAAGATTGGAGACAAAGGGGTTTGAGTTTGTACACTAATCCATTGTGTGTACATGAAAATAAAGACAAGATAAACAACGGTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCATAG 687 0.425 MPMSFICLFLKPSPPSPFYNTLPSYTFIPHTHNIHRSFTMEEDSKSSSEEIDRSSEHNNDEMGTGRSYECVFCRRGFTTAQALGGHMNIHRKDRANKAKPNFPPSSSTKVDESYHYADLGLYSASNPRGNYYSSLPDREVDTNYNYCHQLYFPSHTCGARSSPPSRVQYGEVLCVENQRDPQLLFGQDWRQRGLSLYTNPLCVHENKDKINNGEEDDLDLELRLGHHP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01047 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Cca02g01047 228 SUPERFAMILY beta-beta-alpha zinc fingers 66 95 IPR036236 -
Cca02g01047 228 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cca02g01047 228 Gene3D Classic Zinc Finger 30 118 - -
Cca02g01047 228 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 41 228 - -
Cca02g01047 228 MobiDBLite consensus disorder prediction 38 63 - -
Cca02g01047 228 PANTHER OS07G0101800 PROTEIN 41 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01047 Cca-Chr2 27284581 27285859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01047 68 122 C2H2 Transcription Factor Family AT5G43540 59.649 5.71e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01047 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01047 - - ccaj:109812060 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01047 02 27284581 27285859 Cca02g01047 02 27284581 27285859 ECH
Cca03g02186 03 42579415 42579936 Cca02g01047 02 27284581 27285859 PCT