Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01045 ATGGCTTCATCAGGAAGTGGATCATCTCCTTGTGGGGCATGCAAGTTCCTTCGAAGAAAGTGTGCAGCAGATTGCATCTTTGCACCATACTTTAGCTCCGAACAAGGAGCAGAGAGATTCGCAAGCATCCATAAGGTGTTCGGTGCTAGCAACGTTTCCAAGCTGCTATTGCGTATTCCAGATCACGATCGTTGCGAGGCAATGGTAACAATTGCTTATGAAGCTCAAGCTCGCATCAGAGACCCTGTCTATGGTTGTGTCTCCCATATTTTTTCCTTGCAACAACAGGTAGCATGCTTGCAGGCACAACTAATGCAAATGAAGGCACAGCTGGATCAGAACCAAATGGAGTCCAGGAATTGGTCAGAGAATGTTGGACAAACATTCAATCCATTTTGTCCCACTTCCATGAATAACCCTATATCTCCTCAGAGCTCATTTGATTCAATTGATTATAACAGCATCAATGATGAAGTGAGCATGCATGATGTTCAAAGCAGAGATGATTATTTCTCATTCCAAGCTTGTTCTAACAAAATATCATATAACAACAATGACATGGGTGAGCTGCAGGAATTGGCACTCAGAATGATGAGGAACTCTAACTCAGAATTAAGCTATCCTTAA 627 0.4258 MASSGSGSSPCGACKFLRRKCAADCIFAPYFSSEQGAERFASIHKVFGASNVSKLLLRIPDHDRCEAMVTIAYEAQARIRDPVYGCVSHIFSLQQQVACLQAQLMQMKAQLDQNQMESRNWSENVGQTFNPFCPTSMNNPISPQSSFDSIDYNSINDEVSMHDVQSRDDYFSFQACSNKISYNNNDMGELQELALRMMRNSNSELSYP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01045 208 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 199 - -
Cca02g01045 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 199 - -
Cca02g01045 208 Pfam Lateral organ boundaries (LOB) domain 10 108 IPR004883 -
Cca02g01045 208 Coils Coil 90 117 - -
Cca02g01045 208 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01045 Cca-Chr2 27256520 27258374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01045 1 200 AS2 family AT2G42430 53.252 1.28e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca02g01045 LOB 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01045 K13944 - gmx:100776145 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01045 02 27256520 27258374 Cca02g01045 02 27256520 27258374 ECH
Cca03g02191 03 42621662 42623538 Cca02g01045 02 27256520 27258374 PCT