Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01044 ATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAAGGTGCTACTCATTTTGCAGCCATTCACAAGGTGTTTGGTGCAAGCAATGTTTCAAAGCTCCTTGCTCATCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCACAAGCCAGACTTCAGGATCCAATTTATGGCTGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTGGCTTATCTCAAGGAACAAGCAGCTCAGAATTGTCTCAATACTTCTGCCAATGAAAACCCTAGTGAAAAATTATTTGGAAAATCTTCTGCTGCTTTACCCCAAGATCTTCAAAGTTGGTTCCAGGCTGAAAATTCCAACCTGGGGCCAGAATTTCTTCCCAACTTGTGTACTAATTTTTCCTCAGCAACACAACATTATGGGAACAATAATGCTCTCATGGAAGATCTAAACCCTATTGGGATTAATTATGAAAATTCAGGAGCCATGGAAGAGAGCAGCTCCTTCTCTAGCTTTGATGAGAGTTCTAACTACTCCATACCCTATGACATGCAAACAAACAAGAGGACGTGGGGTTTTCATGAAGTGGAAGACCTACATTCAGTGGCTTTTGGATACGGAGCTCGATATTCATGA 717 0.4282 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQNCLNTSANENPSEKLFGKSSAALPQDLQSWFQAENSNLGPEFLPNLCTNFSSATQHYGNNNALMEDLNPIGINYENSGAMEESSSFSSFDESSNYSIPYDMQTNKRTWGFHEVEDLHSVAFGYGARYS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01044 238 Coils Coil 87 107 - -
Cca02g01044 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 233 - -
Cca02g01044 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 233 - -
Cca02g01044 238 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Cca02g01044 238 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01044 Cca-Chr2 27241723 27242730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01044 7 233 AS2 family AT3G58190 52.174 2.62e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca02g01044 LOB 5.3e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01044 02 27241723 27242730 Cca02g01044 02 27241723 27242730 ECH
Cca03g02192 03 42639748 42640809 Cca02g01044 02 27241723 27242730 PCT