Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01039 ATGGGTAGCAACTTGCACCGATTGCTCAGGAGCTTCTGTTTGGGTACTGATTGGAAGTATGCTATCTTTTGGAAGCTCAAACATCGGGCTCGGATAATCTTGACATGGGAGGATGCTTACTATGACAATCCAAATAGTTGCGACTCTTCCGAAAATAAGAGCTGCCAGAATACATTGGAGCAGATTGGCAGTGCAGATTTTTCACATGATCCTCTAGGGTTAGCTGTGGCAAAGATGTCATATCATGTATATTCATTAGGGGAAGGAATTGTTGGACAGGTAGCTGTTACTGGAAAGCATCGGTGGATCTGTGTAGATAATCAAGTTTCAAGCTCCGGCCCATCTTTTGAGTTTGTTGATGGGTGGCAATCTCAGTTTTCTGCTGGAATTAGGACCATTGTTGTTGTAGCGGTAGTACCCCTTGGAGTTGTTCAACTTGGCTCTTTAAATAAACAGGTTATTGAAGATGTGGGGGTCGTAACCTGTATCCGAAGTCTCCTTTTGTCTACTCAAGATTACATAATAGGCCATGTTCCTAATCAAGTACAAAATAGTGAGAAGCATTCATCTTTGCTGGACACAAAAACTTCAGAAAGTATGCCTGCTTACTTCTACAATACAACAAAAACCATGAAGTGTGAAGCACCGGATATTTTAATGCCCTCTCAATTTCCTGGGAAGAATTATTCACCTCATGCTGTTTATCAGAAAATGGTTGTTGATGTGGCCAAGCATGAGGGGCCTGAATTAAACAGTGAGGGAAATTCCTTTTTGCTTCAGTCAATGTCAAATATGACGAATGTGGAGAACCAAAAATTTGTAGGGATGAGACCTGTAAATGAGAGGAAGTTTGAAGGGAAGAATAGTGGCTGTGAAGATACAAGTTTGGAATCAGGAAAAAATGTTTCGTCATTTTCACACAATTTGATCATGGATAATAATGGTGTGAGTGATTTAGTATGTCCATCAGAAAATGTCAGAGTTGATTGTGTATCCTTCCCTTCAGACTTTCTTGATGCAGCTGTTTGTGAGAGTGACATGTCTCATTATGTAGATATCAACCAAAAAGAAGTGTTGAATGTGCCCGGACCTTCAGATGCAAACTCCCAAAAAAATATTGATAAGTCAAAGTTTCAGACTGAACCTTGTTACAAGGATACCTCATATACATTGAAGTTCCCTGCTGGTTATGAGCTACATGAAGCACTTGGACCAAGTTTTCTGAAAGGGAGTAAATATTTTGATTGGGAAACAGAGACAAATCAGGATAAAACTGCTGAGATCTCAGACGATATTAGCTGTAGCCAATCGACTTCTGAATCTCGCCCAGAGCATCTCTTGGAAGCAATGGTGGCTAACATATGCCATAGTAATAATAATGTTAATAGCGAATTATCATTTTCAACATCAATGCAGGCTGCAATGGCCTCAGGAAGAAATCCTGAAGGTTCTATCCACACTGTGCACACTATTAATTCAGATGGTTGTTCAATGGATGAGTCTCATCTTGTTAGAGAGGACAAACATCATAGTTTGAGTTCATCTGGGATATGTGGTGTAATATCACCAAAGGGTTTTTCTTCAACATGTCCTAGTTCATGTAGTGAACAGTTTGAGAGGTCTTCAGAACCCACTAAGAACAGTAAGAAGAGGGCTAGGCCTGGGGAAAGTTGTAGGCCTAGGCCAAGGGACAGACAACTCATCCAGGATCGTATCAAGGAGTTGAGGGAACTGGTTCCAAATGGTGCAAAGTGCAGTATTGATTCACTACTGGAGTGCACAATAAAACACATGCTCTTTCTTCAGAATATAACTAAGCATGCTGACAAGCTAAATAAATTTGCAGATACAAAGACAAAGTTGCATCACATGGAGAAAGACAATCTTGGATCATCTAGTTATCAACAGGGTTCAAGTTGGGCAATGGAAGTAGGAGGCCATCTGAAAGTTCGTTCAATATTAGTGGAGAATCTTAATAAGAATGGTCAGATGCTTGTTGAGATGCTGTGTGAGGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCATCAGAAGCTTGGGCCTGACAATTTTGAATGGTGCGACAGAAGCTCATGGTGAGAAGACATGTATATGTTTTGTGGTTGAGGCAGGATCAGAAGTTCAAAACAACAGAAACTTACACAGATTGGATATCTTGTGGCCGCTTGTTCAATTACTGCAATCCAAGAGCACAATACACTGCAACCAAGATCTTCTTGCTTCTCCACAACTGCCTTACTGCATGCAAGATCAATGTCCAGATCACAAGGACAAAGACTGGTTGAAGCTTTTACCTGATTATGGTTAG 2328 0.4072 MGSNLHRLLRSFCLGTDWKYAIFWKLKHRARIILTWEDAYYDNPNSCDSSENKSCQNTLEQIGSADFSHDPLGLAVAKMSYHVYSLGEGIVGQVAVTGKHRWICVDNQVSSSGPSFEFVDGWQSQFSAGIRTIVVVAVVPLGVVQLGSLNKQVIEDVGVVTCIRSLLLSTQDYIIGHVPNQVQNSEKHSSLLDTKTSESMPAYFYNTTKTMKCEAPDILMPSQFPGKNYSPHAVYQKMVVDVAKHEGPELNSEGNSFLLQSMSNMTNVENQKFVGMRPVNERKFEGKNSGCEDTSLESGKNVSSFSHNLIMDNNGVSDLVCPSENVRVDCVSFPSDFLDAAVCESDMSHYVDINQKEVLNVPGPSDANSQKNIDKSKFQTEPCYKDTSYTLKFPAGYELHEALGPSFLKGSKYFDWETETNQDKTAEISDDISCSQSTSESRPEHLLEAMVANICHSNNNVNSELSFSTSMQAAMASGRNPEGSIHTVHTINSDGCSMDESHLVREDKHHSLSSSGICGVISPKGFSSTCPSSCSEQFERSSEPTKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQNITKHADKLNKFADTKTKLHHMEKDNLGSSSYQQGSSWAMEVGGHLKVRSILVENLNKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILNGATEAHGEKTCICFVVEAGSEVQNNRNLHRLDILWPLVQLLQSKSTIHCNQDLLASPQLPYCMQDQCPDHKDKDWLKLLPDYG 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01039 775 MobiDBLite consensus disorder prediction 542 567 - -
Cca02g01039 775 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 552 601 IPR011598 GO:0046983
Cca02g01039 775 MobiDBLite consensus disorder prediction 537 567 - -
Cca02g01039 775 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Cca02g01039 775 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 740 IPR043561 GO:0003700|GO:0006355
Cca02g01039 775 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01039 Cca-Chr2 27186755 27194551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01039 1 737 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 41.774 9.48e-164 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01039 - - gmx:100777740 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01039 02 27186755 27194551 Cca02g01039 02 27186755 27194551 ECH
Cca03g02194 03 42665899 42672638 Cca02g01039 02 27186755 27194551 PCT