Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01036 ATGACCAAGAACGCCTCAGAGGCCGCTTCCGCTTCCGCTTCTCCTCCTTGCAGAGGCAGATCCAAGAAGCCCAATCTCCGGGGCTCCAAGGCCCATTCCCCAGGCCCAATGCATTTCAGCTCCAAGACGCCGGAGAAGCCGCCGCAGCGGATCCGCAACCGCGGCATCGCGCTCTCCCTCGCCGAAATCAGAAGGGTAGGGAAGGGTTTGCATGATGGGAAGCAGCAACGCACTGAAACGACGTCGTCGCAGGTCAAAAGTAGTGTCCGGAGACAGATCTCACTGTGGCCTTCTTCTCCCAGTAAACCTAAAGTTACTGCTGATGAAAATAAGCTTCCCCAAAAATATGAAATGTTGGGTGAGTTCTTCCATCATTTGGATAGTTTGATTTCGATTTTCCGACTCAAAGGGTGGACGCCGTCGTTTAAAAAGATCAGTTCCAGAATTGAATCTTTGTCTGACAGGAGTTTTACTCTCTGTCATTTGGCGCAATTGAAATTTATGTTACCTGAGGCTATTCTTCTTGAGAAGATTCTAGTGCTTGATGAAAGGACTAGTTGTATGGTGGCGGATATTCGCATCTCTATAGACCCTAATGCTGTAGAGTCTGATGAGAGAGTGCCCCTGAGGGAGTTGTTTTGGAAACGGCTACGAGGGTTTTGGGAATCTCATCCTGAGGGTGATGAAATCCCTGAAGGAACATTGCCTGAGCCCTTCAATCGCCCAACGAAAGACAGTCTTTTGGACAAGTTAAAAACTAGTCTTCCAACAAAAATGTCATCATGCATGGCATCAGTTGAATTGCCTAATGAGCATCTGGCCGCAGCTTCCCACTTGCCTCCATCCTTTAGACCACGATTTGCTCAGAAATTCAAACTAAATGGAGCAGATGATGTAAATCAGAAGTGTCCGATGGATTCAATGCAGCCTGTGGCTTCTCCAGTTTCAGAGTCAAGCCTGAAGGATAGTCCACCCTTTGAGGATACTAACTCTTGTATGGAAACCTCCCCAACTAAGTTGCCTTCAGAAGCAGCCAGCACTGAAAGGTGTCCAACAATTTGTGCTTCTCTGGAGTTGTCTGGTGCCCCTCCTGCTACTCCAATCAAAACCATTGAAAACGCAGAAAACAAAGACGGATCACTCAAGAGCACTGATGCCATGTCAACTCCAGCCAAACTTGTCTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTCCATCAAAAATACATTATATGAGCCCAGATGACAACACTACCAGTTTGAACAAGCTAGCTAGGCGTCCACCTCGCTCAAGGTCATTAAAATTTGACACTCCAATGAAGAATAAGGAAGCTGTGTATGAAGACAATGCTGGTGACTTACCAGTTGTTGATGATGTTTTTGACATCCTCTCAGAAAATCTTATCCAATCTATCAGAGAAAGGGAAAGAATGGCAATGGAGGAAAGAGACCCAGCTATCTCACAAGCAAAGAAACGAACAAAAAATATAGCTAGCCTGCCTAAGCTCTTTGACATGATTCGCAGCTTGCTCCGACAGCGGTCTTGTATCACTAAATCTGAGCTTGTAAACAAGATAATCACAGGCCGCCGAGATATTGTTGACAGAAGTGAAGTTGAAGAGCAGCTAAGTTTGTTGCTAGAACTAGTACCGGAATGGATTTCTGAGAAGCTGGTCTCTAGTGGGGATTTGATATACGTCATAAATAAATTGTCGAGCCCTGAAACCATTCGAGCATCCCTTGAAGCAGCAAAGTGA 1767 0.4612 MTKNASEAASASASPPCRGRSKKPNLRGSKAHSPGPMHFSSKTPEKPPQRIRNRGIALSLAEIRRVGKGLHDGKQQRTETTSSQVKSSVRRQISLWPSSPSKPKVTADENKLPQKYEMLGEFFHHLDSLISIFRLKGWTPSFKKISSRIESLSDRSFTLCHLAQLKFMLPEAILLEKILVLDERTSCMVADIRISIDPNAVESDERVPLRELFWKRLRGFWESHPEGDEIPEGTLPEPFNRPTKDSLLDKLKTSLPTKMSSCMASVELPNEHLAAASHLPPSFRPRFAQKFKLNGADDVNQKCPMDSMQPVASPVSESSLKDSPPFEDTNSCMETSPTKLPSEAASTERCPTICASLELSGAPPATPIKTIENAENKDGSLKSTDAMSTPAKLVSTPIRLMSATPALRPSKIHYMSPDDNTTSLNKLARRPPRSRSLKFDTPMKNKEAVYEDNAGDLPVVDDVFDILSENLIQSIRERERMAMEERDPAISQAKKRTKNIASLPKLFDMIRSLLRQRSCITKSELVNKIITGRRDIVDRSEVEEQLSLLLELVPEWISEKLVSSGDLIYVINKLSSPETIRASLEAAK 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01036 588 SMART CDT1_2 112 237 IPR014939 -
Cca02g01036 588 MobiDBLite consensus disorder prediction 415 429 - -
Cca02g01036 588 MobiDBLite consensus disorder prediction 410 439 - -
Cca02g01036 588 MobiDBLite consensus disorder prediction 76 105 - -
Cca02g01036 588 MobiDBLite consensus disorder prediction 68 107 - -
Cca02g01036 588 Pfam DNA replication factor CDT1 like 112 218 IPR014939 -
Cca02g01036 588 Pfam DNA replication factor Cdt1 C-terminal domain 470 560 IPR032054 -
Cca02g01036 588 Gene3D - 461 588 IPR038090 -
Cca02g01036 588 MobiDBLite consensus disorder prediction 308 344 - -
Cca02g01036 588 MobiDBLite consensus disorder prediction 311 344 - -
Cca02g01036 588 PANTHER DNA REPLICATION FACTOR CDT1 25 588 IPR045173 GO:0003677|GO:0030174|GO:0071163
Cca02g01036 588 MobiDBLite consensus disorder prediction 1 54 - -
Cca02g01036 588 SUPERFAMILY "Winged helix" DNA-binding domain 106 239 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01036 Cca-Chr2 27156173 27159144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01036 29 585 Core DNA Replication Machinery Family AT2G31270 35.945 3.82e-76 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01036 K10727 - gmx:100778818 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01036 02 27156173 27159144 Cca02g01036 02 27156173 27159144 ECH