Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01033 ATGGCACTGAACAAGAACCACTCCTACAACAAGCTTGGTTATGAAGCTCTCCCACCCATCAAAGCCCATGCTGGAACACTCCAACACACACCACAACCTGCTTCCTCAGACTATGCTTTTCCCATATTTGTGATTGTTGTGCTCAGCATCTTGGCCACTGTTTTGTTGCTCCTCAGCTACTTGACCTTTTTAGCCAAATACTGCTCAAACTGGCGCCAAGTTAACCCTATGAGATGGATTTCCCTCCTGAGAGTTCGACACAATGAGGACCCTTTCATAGCATTCTCTCCTACTATGTGGAACCGAGGACTTGATGAAACTATCATCAGAGAAATCCCAACTTTTCAGTTCACAAAAGGAGGAGAAGGTGAGAACCAAAGTGTGTATGGCTGTGTGGTTTGTTTGAATGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCAAATTGCAACCACGCCTTTCATTTGGACTGCATTGACATTTGGCTTCAGAGCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCGGGCAACACACACTGTCCATTGGACCATATCATTGCTCCAAGTTCTTCTCCACAGGATTCTCAGATGCTCTCCAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTTGGGGGGGAACCTGGAGCAGTGTTGCCACAGGTGCAACAAGAGAGGAATGAGTCAAGGGGAAGCTTGGCACGTGGTAGAAACCACTCTACTAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGAGCAGTTTTTTATTCAACCAATTAGAAGATCTTTCTCGATGGATTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATTATTCAACAAAACAGGCATCAGAATGAGGCTAGTGCTAGTGAGGATTGTAATAGCAAAGGTAGAAGAGCATTCTTTCCGTTTTGTTATGGAAAGGGTTCCAAAAATGCAGTTCTTCCTTTGGAGAATGATGTTTAA 1038 0.4335 MALNKNHSYNKLGYEALPPIKAHAGTLQHTPQPASSDYAFPIFVIVVLSILATVLLLLSYLTFLAKYCSNWRQVNPMRWISLLRVRHNEDPFIAFSPTMWNRGLDETIIREIPTFQFTKGGEGENQSVYGCVVCLNEFKEHDVLKVLPNCNHAFHLDCIDIWLQSNSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQMLSNMGSDEDFVVIELGGEPGAVLPQVQQERNESRGSLARGRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDEQFFIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEDCNSKGRRAFFPFCYGKGSKNAVLPLENDV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01033 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 179 IPR013083 -
Cca02g01033 345 SMART ring_2 131 172 IPR001841 -
Cca02g01033 345 MobiDBLite consensus disorder prediction 228 248 - -
Cca02g01033 345 Pfam Ring finger domain 131 173 IPR001841 -
Cca02g01033 345 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 342 - -
Cca02g01033 345 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Cca02g01033 345 PANTHER RING-H2 FINGER PROTEIN ATL16 5 342 IPR044600 GO:0016567|GO:0016740
Cca02g01033 345 CDD RING-H2_PA-TM-RING 131 173 - -
Cca02g01033 345 SUPERFAMILY RING/U-box 120 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01033 Cca-Chr2 27111885 27112922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01033 31 308 C3H Transcription Factor Family AT1G04360 44.516 4.01e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01033 K19041 - gmx:100809883 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01033 02 27111885 27112922 Cca02g01033 02 27111885 27112922 ECH
Cca02g01033 02 27111885 27112922 Cca03g02197 03 42704323 42705222 PCT