Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01026 ATGGAAGAGGAGTCAAAGGAGAAAAAGGACACTAAGGAAGAGCCACGGTACCGAGGAGTGCGGCGGCGGCCGTGGGGGAAGTTCGCCGCCGAGATTCGGGACCCGGCTCGGCACGGTGCCCGGGTGTGGCTGGGGACATTCCTCACGGCGGAGGAGGCAGCTAGGGCTTATGACCGTGCTGCCTTTGAGATGAGACGTGCTTCAGCCGTTCTCAATTTTCCAAATGAGTATCCTTCATGCTCTTCTATGAACTCCTCTTCATCTTTAGCACCTTCTTCTTCTACAACGGTTAAAAATGATCACGGTAAACAAGTTATTGAGTTTGAGTGCTTGGATGACCAATTGTTAGAGGACCTTCTTGATTGTGATGACTATGCCTACCAGAAAGACTTGCCTAAGAAATGA 405 0.5086 MEEESKEKKDTKEEPRYRGVRRRPWGKFAAEIRDPARHGARVWLGTFLTAEEAARAYDRAAFEMRRASAVLNFPNEYPSCSSMNSSSSLAPSSSTTVKNDHGKQVIEFECLDDQLLEDLLDCDDYAYQKDLPKK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01026 134 PANTHER ETHYLENE RESPONSE FACTOR 1 124 - -
Cca02g01026 134 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Cca02g01026 134 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Cca02g01026 134 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Cca02g01026 134 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Cca02g01026 134 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Cca02g01026 134 PANTHER DNA-BINDING DOMAIN 1 124 IPR044808 GO:0003700|GO:0009873
Cca02g01026 134 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cca02g01026 134 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Cca02g01026 134 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01026 Cca-Chr2 27013862 27014527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01026 13 124 AP2-EREBP Transcription Factor Family AT3G23230 56.098 4.46e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g01026 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01026 - - gmx:100781487 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01026 02 27013862 27014527 Cca02g01026 02 27013862 27014527 ECH
Cca02g01026 02 27013862 27014527 Cca03g02198 03 42709704 42710249 PCT