Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01024 ATGATGCTGCTGGAGCCTTCAGAAATTATGTTCAAATCATTTTCAGACAATTCTGTTCGAGACACGATGCAAGATTGGCTTTCCTTTGATATGGTTGACCTTTCCTTCACACAAAGAAACCACCAAAAGGCCAAGCAATTGGTGGTAAAGTCTGAGGTGCATAACAAGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGGAACGGTGCAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGATGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTAAACTTTCCAGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATGCGATATTGCTGCTGCAATGGATCTTCTCCTGCACTTGCACTCAAGGAGAGGAACTACATCAAAAGAAAAATGTCATCAAAAGCTAGAAAGTGTAGAGAGAAACAAGAATCATCAGAGTCAGCAACATCGAGTGTGGTTGTGTTAGAGGACTTGGGAGTTGAATATCTAGAGCAACTTCTCGCCATATCGGATCAAAGTGTAAGCTTATCTCCTGCTATGAATTAA 609 0.4253 MMLLEPSEIMFKSFSDNSVRDTMQDWLSFDMVDLSFTQRNHQKAKQLVVKSEVHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESADAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEMRYCCCNGSSPALALKERNYIKRKMSSKARKCREKQESSESATSSVVVLEDLGVEYLEQLLAISDQSVSLSPAMN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01024 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 39 195 - -
Cca02g01024 202 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Cca02g01024 202 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Cca02g01024 202 CDD AP2 60 118 IPR001471 GO:0003700|GO:0006355
Cca02g01024 202 PANTHER DNA-BINDING DOMAIN 39 195 IPR044808 GO:0003700|GO:0009873
Cca02g01024 202 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Cca02g01024 202 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Cca02g01024 202 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Cca02g01024 202 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Cca02g01024 202 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01024 Cca-Chr2 26978087 26978695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01024 44 194 AP2-EREBP Transcription Factor Family AT3G23240 56.579 4.25e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g01024 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01024 K14516 - gmx:100527364 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01024 02 26978087 26978695 Cca02g01024 02 26978087 26978695 ECH
Cca03g03083 03 52307826 52308362 Cca02g01024 02 26978087 26978695 PCT
Cca02g01024 02 26978087 26978695 Cca03g02199 03 42723042 42723908 PCT