Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01023 ATGACTTCTCCTTTCTTTCAGAACTCAGCAGATTGGGACATGTCGCAGGACCCTTCAGAAATGCTGTTCGAATCATTTTCAAACAATGCTGTTCTTGACCCTATCCACGATTCTCTTTCCTTCGATATGGTGGACTTCTCCACGCCACCAACACAAGGAAACCACAATGAGCCAAACCAATTGGTGGTGAAATCTGAAGTGCAGAGTAAGCAAAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGGAATGGTTCAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGAAGCTGCTGCTCTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCACAATGCTGTACTCAATTTTCCGGTCGAAAGGGTCAAAGAGTCTTTGGAAGAGATTCAATATAGCTGCTGCAATGGATCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCATCAAAGGGTAAAAAGTGTAAAGGGAAAGAGACATCAACATCGAGTGTGATGGTGTTAGAGGACTTGGGAGTTGACTATCTAGAGCAACTTCTGACCATATCTGAGCATAGTTCAAGCCCTAGCTACTTCAACTAA 636 0.445 MTSPFFQNSADWDMSQDPSEMLFESFSNNAVLDPIHDSLSFDMVDFSTPPTQGNHNEPNQLVVKSEVQSKQRSYIGVRKRPWGKFAAEIRDTTRNGSRVWLGTFESAEAAALAYDQAAFSMRGHNAVLNFPVERVKESLEEIQYSCCNGSSPALALKERHCIQRKLSSKGKKCKGKETSTSSVMVLEDLGVDYLEQLLTISEHSSSPSYFN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01023 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 59 206 - -
Cca02g01023 211 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Cca02g01023 211 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Cca02g01023 211 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Cca02g01023 211 PANTHER DNA-BINDING DOMAIN 59 206 IPR044808 GO:0003700|GO:0009873
Cca02g01023 211 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Cca02g01023 211 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Cca02g01023 211 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Cca02g01023 211 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Cca02g01023 211 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01023 Cca-Chr2 26954291 26954926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01023 41 206 AP2-EREBP Transcription Factor Family AT3G23240 50.888 9.60e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g01023 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01023 K14516 - gmx:100812017 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01023 02 26954291 26954926 Cca03g03083 03 52307826 52308362 ECH
Cca02g01023 02 26954291 26954926 Cca02g01608 02 34849302 34849790 ECH
Cca02g01023 02 26954291 26954926 Cca02g01023 02 26954291 26954926 ECH
Cca03g02200 03 42730758 42731399 Cca02g01023 02 26954291 26954926 PCT