Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01022 ATGGCATCCCCTTTGTTTGAGAATCCATACTGGAAGGAGCCTTCAGAAATTTTGTTCAAATCATTGTCAAGCAATATTGCTGTTCCTGACCCTCTCCACGATTCTCTTTCTTTCGATATGGTTGACTTCTCCACGCCACCAACAGAAGGAAACCACCATAACGAGGCAAAGCAATTGGTGGTGAAATCTGAAGTGCAGGATAAGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGGAATGGCGTAAGGGTTTGGCTTGGAACCTTTGAGAGTGTAGAAGCTGCTGCGTTAGCTTATGACCAAGCCGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCAGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATCCAATATAGCTGCTGCAATGGATCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAACGAAAATTGTCAGCAAAAGGTAGAAAGTGTAAAGGGAAAGAGACATCAACATCGAGCATGGTGGTGTTAGAGGACTTGGGAGTTGACTATCTAGAGCAACTTCTAACCATATCTGATCAAAGTGCAACCCATAGCTACTTCAACTAA 630 0.4413 MASPLFENPYWKEPSEILFKSLSSNIAVPDPLHDSLSFDMVDFSTPPTEGNHHNEAKQLVVKSEVQDKERSYIGVRKRPWGKFAAEIRDTTRNGVRVWLGTFESVEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYSCCNGSSPALALKERHCIQRKLSAKGRKCKGKETSTSSMVVLEDLGVDYLEQLLTISDQSATHSYFN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01022 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 49 202 - -
Cca02g01022 209 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Cca02g01022 209 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Cca02g01022 209 PRINTS Ethylene responsive element binding protein signature 111 131 IPR001471 GO:0003700|GO:0006355
Cca02g01022 209 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Cca02g01022 209 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Cca02g01022 209 PANTHER DNA-BINDING DOMAIN 49 202 IPR044808 GO:0003700|GO:0009873
Cca02g01022 209 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Cca02g01022 209 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Cca02g01022 209 Gene3D AP2/ERF domain 71 131 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01022 Cca-Chr2 26926089 26926718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01022 54 204 AP2-EREBP Transcription Factor Family AT3G23240 55.484 1.72e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g01022 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01022 K14516 - gmx:100811486 325.865