Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01021 ATGACTTCCCCTTTGTTTCAGAATCCAGATTGGAAGAACATGTTGCAGGAGCCTTCAGAAATTTTGTTCCAATCATTGTCAAGCAATGATGTTCTTGACCCTCTCTACGATTCTCTTTCCTTCGATATGGTTGACTTCTCCACGCCACAAACACAAGGAAACCACAACGAGGCAAAGCAATTGGTGGTGAAGTCTGAAGTGCAGAACAAGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGGAATGGCGCAAGGGTTTGGCTTGGAACCTTTGAAAGTGCAGAAGCTGCTGCGTTGGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCTGTCAAAATGGTGGAAGAGTCTTTGCAAGAGATTCAATATAGCTGCTGCAATGGATCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCATCAAAAGTTTTTGTGTTGAAGTATTCTGAATCCATTCTTGCATCAAACATTGCCCTTCACTCTGCTGAGGTTCATTGTCTTCAAATTCCATCTTCACAATCCCTGAACATTTCCAATAAAATTCTCGAGCCAAGCTGA 639 0.4304 MTSPLFQNPDWKNMLQEPSEILFQSLSSNDVLDPLYDSLSFDMVDFSTPQTQGNHNEAKQLVVKSEVQNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESAEAAALAYDQAAFSMRGHNAVLNFPVKMVEESLQEIQYSCCNGSSPALALKERHCIQRKLSSKVFVLKYSESILASNIALHSAEVHCLQIPSSQSLNISNKILEPS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01021 212 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Cca02g01021 212 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Cca02g01021 212 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Cca02g01021 212 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Cca02g01021 212 PANTHER OS09G0572000 PROTEIN 47 168 - -
Cca02g01021 212 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Cca02g01021 212 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Cca02g01021 212 PANTHER DNA-BINDING DOMAIN 47 168 IPR044808 GO:0003700|GO:0009873
Cca02g01021 212 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Cca02g01021 212 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01021 Cca-Chr2 26919731 26920758 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01021 41 169 AP2-EREBP Transcription Factor Family AT3G23240 57.692 3.97e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g01021 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01021 K14516 - gmx:100812017 280.411