Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01020 ATGACTTCCCCTTTCTTCCAGAATCCAGATTGGGACAGGTCGCAGCACGACCCTTCAGAAATTTTGTTCGATTCGAGTTCAAGCAATGTTGTTCTTGATCCTATCCACGACTCTCTTTCCTTCGACATGGTTGACTTCTCCACGCCGCCAACACAAGGAAACCACAACGAGTCAAAGCAATTTGATGTGGTGAATTCTGAAGCGCAGAATAAGGAAAGGTCGTACATAGGAGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGGAATGGTGCAAGGGTTTGGCTTGGAACCTTTGACACTGCAGAGGCTGCTGCGTTGGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAGTGCTGTACTCAACTTTCCTGTGGAAAGGGTCAAAGAGTCTTTGCAAGGGATCCATTATAATGGGTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAACGAAAATTGTCATCAAAAGGTAGAAAGTGTAAAGGGACCGAGACATCAACATCGAGTGTGGTGGTGCTAGAGGACTTGGGAGTTGACTATCTAGAGCAACTTCTAACCATATCTGATCAAAGTGCAACCCGTAGCTACTTCAACTAA 630 0.4635 MTSPFFQNPDWDRSQHDPSEILFDSSSSNVVLDPIHDSLSFDMVDFSTPPTQGNHNESKQFDVVNSEAQNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDTAEAAALAYDQAAFSMRGHSAVLNFPVERVKESLQGIHYNGSSPALALKERHCIQRKLSSKGRKCKGTETSTSSVVVLEDLGVDYLEQLLTISDQSATRSYFN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01020 209 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Cca02g01020 209 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Cca02g01020 209 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Cca02g01020 209 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Cca02g01020 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 48 198 - -
Cca02g01020 209 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Cca02g01020 209 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Cca02g01020 209 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Cca02g01020 209 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
Cca02g01020 209 PANTHER DNA-BINDING DOMAIN 48 198 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01020 Cca-Chr2 26887599 26888228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01020 41 204 AP2-EREBP Transcription Factor Family AT3G23240 51.163 3.09e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g01020 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01020 K14516 - gmx:100811486 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01020 02 26887599 26888228 Cca02g01020 02 26887599 26888228 ECH