Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01018 ATGGAGGGATCAGGAAGATTGGTTCCAAATGGTGAGGTTCGGTATAGAGGGATTCGGAGGAGGCCATGGGGTAAGTTTGCTGCTGAGATTCGTGACCCTACTAGGAAAGGGACTCGAGTCTGGCTCGGTACCTTTGACACTGCCGAGGAAGCTGCACGTGCCTACGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTCAATTTCCCAAATGAGTATCAATCTCCTAATCCTAACTCTTCATCGTTACCTATGCCTCTCACTGTGCCTCCTCCTCCTCcttcttcttcttcttcttcttcttcctcttcttattctGGTGATGGCCTTGTGATGCAAGGTGGTGATACTTTTGAGTTGGAGTACTTGGATAATAAGTTGCTCGAGGAACTCCTTCAGGTGCAAGATAACAGACACTTCTACAAGTGA 435 0.4391 MEGSGRLVPNGEVRYRGIRRRPWGKFAAEIRDPTRKGTRVWLGTFDTAEEAARAYDAAAFHFRGHRAILNFPNEYQSPNPNSSSLPMPLTVPPPPPSSSSSSSSSSYSGDGLVMQGGDTFELEYLDNKLLEELLQVQDNRHFYK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01018 144 MobiDBLite consensus disorder prediction 71 112 - -
Cca02g01018 144 MobiDBLite consensus disorder prediction 85 99 - -
Cca02g01018 144 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Cca02g01018 144 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Cca02g01018 144 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Cca02g01018 144 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Cca02g01018 144 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Cca02g01018 144 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Cca02g01018 144 PANTHER DNA-BINDING DOMAIN 11 135 IPR044808 GO:0003700|GO:0009873
Cca02g01018 144 Pfam AP2 domain 14 65 IPR001471 GO:0003700|GO:0006355
Cca02g01018 144 PANTHER - 11 135 - -
Cca02g01018 144 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01018 Cca-Chr2 26852639 26853382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01018 10 141 AP2-EREBP Transcription Factor Family AT3G23230 57.895 9.77e-41 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g01018 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01018 - - gsj:114381985 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02201 03 42761778 42762499 Cca02g01018 02 26852639 26853382 PCT