Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01017 ATGGATTTTGATTATTCATCTTTCTTCCAGTACCAAAACCTCAACACTAATAACTCCTTTCTAAATTCCTGTGTTTCTTCTTCAGAACCATTCCCTTGGGAAGACTTTCTTCTCTTCGATGAAGAAAACACCACCCTTAATCCCTTCAGCAACTCACAATCACAAATCAAGGAATCATCCTCAGATTCCAACTCTTCAGGCTCTTTGGTCAGCACTGAGTCACAAGAAGTGTCCTCCAACTTAAGTCATCATGCTGATCAAGTACTGATCAAGGAAACAACACAACCACCAAAGGAAAGTAACAAAGAGAAAAGACCCTTCAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCGGAAATAAGAGACTCCACAAGAAATGGGGTTAGGGTGTGGATAGGAACATTTGACACAGCTGAGGCAGCAGCACTAGCTTATGACCAAGCAGCTTTGTCCACGAGAGGTTCCATGGCAGTGCTGAATTTCCCTGAAGAAGTGGTGAGGGAATCACTCAAAGACATGAACAACAAGACATCATGGGAAGATGGTTCCTCTCCAGTGTTGGCACTCAAGAGGAAACACACCATGAGAAGAAAGTCCAAAACTTGTAACAAAAAGACCAAAAGGGACCATGGAAAAGGGTTAGAGAACATGGTTTCACAAAGTGTGCTTGTGTTGGAGGATTTGGGTTCTGAATACTTGGAACAACTTCTCAGCTTGACTTCTTCTGATGCTGAACTCATTTGCTAG 753 0.4329 MDFDYSSFFQYQNLNTNNSFLNSCVSSSEPFPWEDFLLFDEENTTLNPFSNSQSQIKESSSDSNSSGSLVSTESQEVSSNLSHHADQVLIKETTQPPKESNKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMNNKTSWEDGSSPVLALKRKHTMRRKSKTCNKKTKRDHGKGLENMVSQSVLVLEDLGSEYLEQLLSLTSSDAELIC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01017 250 MobiDBLite consensus disorder prediction 49 110 - -
Cca02g01017 250 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Cca02g01017 250 MobiDBLite consensus disorder prediction 49 95 - -
Cca02g01017 250 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Cca02g01017 250 MobiDBLite consensus disorder prediction 194 215 - -
Cca02g01017 250 PANTHER DNA-BINDING DOMAIN 12 243 IPR044808 GO:0003700|GO:0009873
Cca02g01017 250 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Cca02g01017 250 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Cca02g01017 250 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Cca02g01017 250 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Cca02g01017 250 MobiDBLite consensus disorder prediction 194 209 - -
Cca02g01017 250 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 243 - -
Cca02g01017 250 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Cca02g01017 250 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01017 Cca-Chr2 26817533 26818576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01017 100 239 AP2-EREBP Transcription Factor Family AT3G23240 62.143 6.21e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g01017 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01017 K14516 - gmx:100784784 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01017 02 26817533 26818576 Cca02g01017 02 26817533 26818576 ECH
Cca03g02202 03 42778313 42779011 Cca02g01017 02 26817533 26818576 PCT