Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01012 ATGGGGAGAGCTCCTTGCTGTGAGAAAATGGGGTTGAAGAAAGGAACATGGACTCCAGAGGAAGATCAGATTCTCATGGATCATATCAACACACATGGTCACAAAAATTGGCGAGCTCTACCCAAACTAGCTGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATGAATTATTTGAGGCCAGAAATTAAACGGGGCAACTTTACTAAGGAAGAAGAGGAACTGATAATCCAGTTGCATGAAACATTGGGAAACAGATGGTCAGCAATAGCAGCAACATTACCTGGACGCACAGACAACGAAATTAAGAATGTGTGGCACACCCACTTGAAGAAGAGGCTGCCCCAAGACACAAAAACCAAACACAAAAAACGAAGTGCAAAACAAAACTCATCCTTGAACCCCCAAATCACAGAGGAAAAGGAGAAGCCACTATTGTCTCCACCTCACTGTGTAAGTAGTGATGTCTCAACCCTCACCACCACTGCTACTAGTGACACCAATGATGCTATTCATGTGCCCATCAATAGAGGTGCTGCTGAATCGCTCGACGATGATTTCTGGTCTCAAGTTCTGTCATCTTATAATTCCGATGAGACCACAAGTTTTCCACCCAATTCATCAAGTGTGTACCATAATGTGGACTTTTGGTATGATGTTTACATGGGAGCGCAAGATTTGCCATACTTTTGA 699 0.4421 MGRAPCCEKMGLKKGTWTPEEDQILMDHINTHGHKNWRALPKLAGLLRCGKSCRLRWMNYLRPEIKRGNFTKEEEELIIQLHETLGNRWSAIAATLPGRTDNEIKNVWHTHLKKRLPQDTKTKHKKRSAKQNSSLNPQITEEKEKPLLSPPHCVSSDVSTLTTTATSDTNDAIHVPINRGAAESLDDDFWSQVLSSYNSDETTSFPPNSSSVYHNVDFWYDVYMGAQDLPYF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01012 232 CDD SANT 69 112 IPR001005 -
Cca02g01012 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 229 - -
Cca02g01012 232 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca02g01012 232 CDD SANT 16 61 IPR001005 -
Cca02g01012 232 MobiDBLite consensus disorder prediction 116 130 - -
Cca02g01012 232 Gene3D - 11 67 - -
Cca02g01012 232 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g01012 232 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca02g01012 232 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca02g01012 232 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Cca02g01012 232 SMART sant 13 63 IPR001005 -
Cca02g01012 232 SMART sant 66 114 IPR001005 -
Cca02g01012 232 MobiDBLite consensus disorder prediction 110 161 - -
Cca02g01012 232 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 229 - -
Cca02g01012 232 Gene3D - 69 146 - -
Cca02g01012 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca02g01012 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01012 Cca-Chr2 26696546 26700208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01012 1 232 MYB Transcription Factor Family AT2G31180 50.806 3.07e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01012 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01012 K09422 - gmx:106794951 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01012 02 26696546 26700208 Cca02g01012 02 26696546 26700208 ECH
Cca02g01012 02 26696546 26700208 Cca03g02206 03 42843285 42845452 PCT