Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01009 ATGCCGTCGCTGCTCTCTCCGGGGAAGATCCTCCGTCTGGAAGTGGAGGATTTCAAGTCCTACAAGGGCTTCCAACAAATCGGTCCCTTCTTCGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGCAAGTCGAACCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGCGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGACAAGGAGCAGAAAGGTCGCAGAGCCCTCGTTCGCCTCGTGTACCAACTCGCCAACTCCGAAGAGATCCAATTCTCCCGCATCATCACCAGCGCCGGCGCCAGCGAGTACCGGATCAACGGCGCCGTCGTCAATTGGGACAGCTACAACGCCAAACTCAAGTCCCTCGGGATTCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGACGTGGAGTCCATTGCATCAAAGAATCCCAAAGAGCTCACTGCTCTGGTTGAGCAGATATCTGGCTCAGACGAGCTCAAGAGAGATTATGAGAAGTTTGAGGAGGAAAAAGGTGCTGCTGAGGAAAAATCGGCACTTGTTTATCAGAAGAAAAAGACGGTGGTTTTGgaaagaaaacagaaaaaagaacagaaggaagaagcagagaagcaTATCCGCCTGCAAGAGCAACTGAAATCCGTGAAGAAAGAACATTTCTTGTGGCAGTTGTTTAATATAGAAAATGATTATGTTAAAGCAGCCGATGATCTTGAAGATGAGAAAAAAAGTCGTGAAGGTGTTGTTAAAGAACTAGAGTATTTTGAAAGTGAAGCTGGTAAAAAGAAAAAAGAGCAGGCCAAATATCTGAAAGAGATTGCACTACGTGAGAAGAAAATTACTGAGAAAAGCAACAGGCTTGACAAGAGACAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGAATCGTATCAATTCAAAAATTAAAAAAGGGAAGAAAGAGCTTGATAAAAAAGAGGAAGAACGGAGGAAGCATGCCACTGTTATAACAGACTTGCAGAATGGCATCCAGGATCTTACAGGAAAAATGGCAGACCTACAGGAAAAGGGTCGTGATGTTGGTGATCAACTTCAATTGGATGACGATGACTTGGAAAAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACAGCAAAGCTTAAAGAGGAAAAAGAGCTTCTTGATAGGCAACAACATGCGAATAGTGAAGCTCAAAAAAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCACAGGAAGAACAGATGAGGACAAGGCTTAAAAAAATTCTTGGTAATTCTACAAAATATAAAGATGAGCGTGAAAACTTGGAAAAAGAACTACGTGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAAATAGAAAATCAACTACGTGAATTAAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTTGAGACTCTGAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAATCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTCGTCGTTAAAGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAGTCAATCCGGGTGAAACCAATAATGGAAAGATTGCGCACATTAGGGGGTACTGCGAAACTGGTTTTTGATGTGATTCAATATCCTTTTTATCTATTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTCGGGAATACTCTTGTTTGTGATGATCTCGAGGAGGCCAAAATTTTAAGCTGGAGCGGTGAGAGGTTTAAAGTTGTAACCGTTGATGGTATTCTGCTGACAAAATCTGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAAGCTAGGTCAAAGCAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAGTTGGAAGAGTTGGGATCGATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCGGGAAAAATTAGTGGGCTTGGGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGTATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAGACACCATCAAAGAAAGAATTGAACATATCATTCCAGAAGTGCAGAAGTTAAATGATGATGTTAACAAGAAGAATGCAGACATACGAAAGCTCGAGAAGAGGATAAATGAAATTACTGATAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAATCGACTCAAAGCTGCTCAAAATGTAGCAGAGGAGAGGCTGAAGCTCAGTAGCCAACTTTCAAAATTAAAATATCAATTGGAGTATGAGCAAAATCGGGACATGAGTACACGAATTCAAGAATTGGAATCTTCTCTACGTGCTTTAGAGAATGATTTAAAACGGGTACAGGACAGAGAGGCTGAAGCAAAGTCGGAAGCTGAGAAAGCTACTGAAGAGATTAATCAGTTTAAGGAAGACATAAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAGGAGTGGAAGAAGAAAGCTTCTGCAGCCACGACAAACATATCCAAACTTAATCGTCTGATAAATTCTAAGGAGGCACAACTTCAGCAGTTGACTGTGCAAAAGCAGGAAATATTAGAAAAGTGTGAACTAGAACAGATTAGCCTTCCGATCATACCAGATCCTATGGATACTGATAGCTCAGTACCAGGACCAGTTATTGAGTTTGAGGAATTAAGTAGGGCACTGAAAGATAGGAGACACTCTGACAGGGATAAAATTGAGATAGAGTTTAAGCAAAAAATGGATGCCTTAGTCTCCGAGATTGATAGAACAGCACCAAATTTGAAGGCATTGGACCAATACGAGGCCCTACGAGAAAAAGAAAAGGCTGTAACTGAAGAGTTTGAGGTTGTCAGGAAAGTGGAGAGGGAAATAACACAGAGATTCAATGAGGTTAAGCAGACAAGGTACAACCTGTTCATGGATGCTTTCAACCACATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAGCACACATCCACTGGGGGGAACAGCATACCTAAACTTGGAAAATGACGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAACGTTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCACAGTTATAAGCCTTCACCATTTTTTATATTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTCGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCGAGGGTTATTCAGGATTCCGAAGGAGGGAATGGTTTTCAGAGTATTGTGATATCACTGAAAGACACCTTTTATGACAAAGCCGAAGCGTTAGTTGGGGTTTACAGAGACTCTGAAAGAGGCTCTTCGAGAACACTTACATTTAATCTGACTAATTATCGGGAATCCTAA 3669 0.4148 MPSLLSPGKILRLEVEDFKSYKGFQQIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRRALVRLVYQLANSEEIQFSRIITSAGASEYRINGAVVNWDSYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDELKRDYEKFEEEKGAAEEKSALVYQKKKTVVLERKQKKEQKEEAEKHIRLQEQLKSVKKEHFLWQLFNIENDYVKAADDLEDEKKSREGVVKELEYFESEAGKKKKEQAKYLKEIALREKKITEKSNRLDKRQPELLKLKEEMNRINSKIKKGKKELDKKEEERRKHATVITDLQNGIQDLTGKMADLQEKGRDVGDQLQLDDDDLEKYFRIKEEAGMKTAKLKEEKELLDRQQHANSEAQKNLEENLQQLRNRESELNSQEEQMRTRLKKILGNSTKYKDERENLEKELRVMQDKHRDSKKKYENLKLKIGEIENQLRELKADRYENERDAKLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVKDEKTGKECIKYLKDQRLPPQTFIPLESIRVKPIMERLRTLGGTAKLVFDVIQYPFYLFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLGKKIQYAEIEKRSIEDKLSNLSQEKDTIKERIEHIIPEVQKLNDDVNKKNADIRKLEKRINEITDRIYRDFSKSVGVANIREYEENRLKAAQNVAEERLKLSSQLSKLKYQLEYEQNRDMSTRIQELESSLRALENDLKRVQDREAEAKSEAEKATEEINQFKEDIKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLINSKEAQLQQLTVQKQEILEKCELEQISLPIIPDPMDTDSSVPGPVIEFEELSRALKDRRHSDRDKIEIEFKQKMDALVSEIDRTAPNLKALDQYEALREKEKAVTEEFEVVRKVEREITQRFNEVKQTRYNLFMDAFNHISGNIDKIYKQLTKSSTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVIQDSEGGNGFQSIVISLKDTFYDKAEALVGVYRDSERGSSRTLTFNLTNYRES 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01009 1222 Pfam RecF/RecN/SMC N terminal domain 10 1204 IPR003395 -
Cca02g01009 1222 Pfam SMC proteins Flexible Hinge Domain 517 637 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cca02g01009 1222 Coils Coil 170 190 - -
Cca02g01009 1222 Gene3D - 1043 1222 IPR027417 -
Cca02g01009 1222 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1221 - -
Cca02g01009 1222 CDD ABC_SMC1_euk 1101 1216 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Cca02g01009 1222 Gene3D - 797 944 - -
Cca02g01009 1222 PIRSF SMC 8 1220 IPR024704 GO:0005524|GO:0016887
Cca02g01009 1222 Gene3D - 8 232 IPR027417 -
Cca02g01009 1222 Gene3D - 578 665 - -
Cca02g01009 1222 Coils Coil 721 748 - -
Cca02g01009 1222 Coils Coil 307 334 - -
Cca02g01009 1222 SUPERFAMILY Smc hinge domain 481 687 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cca02g01009 1222 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1221 - -
Cca02g01009 1222 SMART SMC_hinge_2 517 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cca02g01009 1222 Gene3D - 495 577 - -
Cca02g01009 1222 Coils Coil 797 817 - -
Cca02g01009 1222 Coils Coil 834 938 - -
Cca02g01009 1222 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Cca02g01009 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1205 IPR027417 -
Cca02g01009 1222 Coils Coil 756 783 - -
Cca02g01009 1222 Coils Coil 342 362 - -
Cca02g01009 1222 Coils Coil 680 700 - -
Cca02g01009 1222 Coils Coil 384 502 - -
Cca02g01009 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 266 IPR027417 -
Cca02g01009 1222 Coils Coil 198 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01009 Cca-Chr2 26627545 26640004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01009 8 71 Structural Maintenance of Chromosomes family AT5G61460 40.909 4.71e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01009 K06636 - gmx:100791953 1997.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01009 02 26627545 26640004 Cca02g01009 02 26627545 26640004 ECH