Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01005 ATGCATATAGGTCAGGCAGATACAACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAATGAAACCTATACCCTTTCAGACGATCTGTAATAATATGGTTGGGGTGTTAAAGCGTTTGAAACCAGTACTTGATGACGTCATGGATTACAAAATCCCTTCAGATGCAAATCTATGTAAAGAGTGTGAGAATTTGGATATGCGGGTTAATGAAGCTAGAGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAAGATCCACAGTGTTCTACAAGGTGGTACATTGTTGATCAAGTTACAGAGTTCTTCACTAGATATCTGTCACATGATAGTTAGATCCTTGCAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAATGGCAATGGTCTACATAGAAGAGGCACTAAGAAGCCAAAGAGATAATATTGAACCTTGCAAGGAGCATCTCAAGGAAATTATTGAGTTACTTAAATTGACATCAAATCAGGAGCTCTTAAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCCGAAACCAATAAAATGAAAGGGGACTTGGTAGAGATGAATGAAATCGTGATTCTTGTCCGTACTTTGCGTGATTATGTGATGAAAACTGAGTGCCCTGTAGTCAAGAGTGGACTCTCAATCCCTCCTTACTTCTGCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATGCAAAAGTGGCTTGATCATGGGTTGACTGTTTGTCCCAAAACTCGTCAGAGACTTACTCATACAAAACTCATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTACGGTAACTCCGAGCACAATAAATCTTCTGGTACAACATCCCCCTCAGATCATTTATTGTCTCAAGATTTAACTCCTAATTGTTGTGTTGGGTCTTTACCTAGTTGCAATTCCATTTCAAGATCATCTCCTAAAACTGAAAGTACATTCGAAAAGCAAAAGGGTGATAACTCTTTCAGATTATGTGGAGAATACAATGGATGCCAGAGTGGAGGAACTGAAAAGTGTGAGCAACAATCCCCATATGTACACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACCGATTGCACACTTGCAGTTTCAAAAGATGTGTCAGGGATATCCAATAAGCATCAAAATGTGAAGGTGCTGTCTGGAGAAATCACAAAGGCATGTCCTCCTTCTCCCAGTAACAAACAATCAGGGATATCTTCTTGGTTATCTGGAAAGCAATTTCAAAACCCTGGATCATATGAGGGAGTGCTGGAGAATGGAaataataatgatagtaataataataGTCATTCAAGCATTGATTCCCATTCTGTTTTCAACTCAGGATCAGATGAATTGACCACCTCATCTCATATCAATAAATTGATTGAAGACCTTCACCACCATTCAATTGAAACAAAAACTACTGCTGCAGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAATCGTATCATTGTAGGGAAGTGTGGGGCTGTGATGCCTTTGCTTTCGCTGCTATATTCAGATGGGAAGGTAACACAAGAGCATGCTGTGACAGCTCTGCTGAATTTATCAATTAATGAAGACAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTGAAAACAGGAAATGACAGCGCCAAGGAGAATTCTGCAGCAGCTCTATTCAGCCTCTCAGTAATAGAGAACAATAAGGCAAGAATTGGCCGTTCTGGAGCAGTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGTACTCTCAGGGGAAAGAAAGATGCTGCTACTGCTTTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCAGTGAAGTTTCTGGTTCGGTTAATGGACCATGCTGAGGGAATGGTTGACAAGGCTGTCGCTCTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGATTTGAAATTGCAAGGGAAGGGGGCATCCCCTTACTAGTTGAAATTCTTGAGTCAGGTTCTCAGAGAGGGAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTACCAAGTTCTGTACTCTAGTTTTGCAAGAAGGAGCTGTACCTCCTCTAGTTGGATTATCTCAATCTGGTACACCAAGAGCAAGGGAAAAGGCACAACAGCTCCTCAGCCATTTTCGTAATCTGCGGGAACTTGCTGCTAGTGGGAAGGGAAAATCATGA 2385 0.4063 MHIGQADTTSVKCLINSISRFIHLVSCQTMKPIPFQTICNNMVGVLKRLKPVLDDVMDYKIPSDANLCKECENLDMRVNEARDFIEKWSPKMSKIHSVLQGGTLLIKLQSSSLDICHMIVRSLQSPPSASVLANLQHYIQELQCLKKEMAMVYIEEALRSQRDNIEPCKEHLKEIIELLKLTSNQELLKESIAVEKERLNAETNKMKGDLVEMNEIVILVRTLRDYVMKTECPVVKSGLSIPPYFCCPLSLELMLDPVIVASGQTYERQSMQKWLDHGLTVCPKTRQRLTHTKLIPNYTVKAMIATWCEENNVKLYGNSEHNKSSGTTSPSDHLLSQDLTPNCCVGSLPSCNSISRSSPKTESTFEKQKGDNSFRLCGEYNGCQSGGTEKCEQQSPYVHSRSESFSSSISSTDCTLAVSKDVSGISNKHQNVKVLSGEITKACPPSPSNKQSGISSWLSGKQFQNPGSYEGVLENGNNNDSNNNSHSSIDSHSVFNSGSDELTTSSHINKLIEDLHHHSIETKTTAAEELRLLTKHNKENRIIVGKCGAVMPLLSLLYSDGKVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDSAKENSAAALFSLSVIENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMDHAEGMVDKAVALLSNLSTIPEGRFEIAREGGIPLLVEILESGSQRGKENAASILLQLCLHSTKFCTLVLQEGAVPPLVGLSQSGTPRAREKAQQLLSHFRNLRELAASGKGKS 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01005 794 MobiDBLite consensus disorder prediction 439 500 - -
Cca02g01005 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 590 IPR000225 GO:0005515
Cca02g01005 794 MobiDBLite consensus disorder prediction 442 500 - -
Cca02g01005 794 PANTHER U BOX DOMAIN-CONTAINING 11 788 - -
Cca02g01005 794 Pfam Armadillo/beta-catenin-like repeat 578 617 IPR000225 GO:0005515
Cca02g01005 794 Pfam Armadillo/beta-catenin-like repeat 622 658 IPR000225 GO:0005515
Cca02g01005 794 Pfam Armadillo/beta-catenin-like repeat 537 576 IPR000225 GO:0005515
Cca02g01005 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 630 672 IPR000225 GO:0005515
Cca02g01005 794 SMART arm_5 700 740 IPR000225 GO:0005515
Cca02g01005 794 SMART arm_5 619 659 IPR000225 GO:0005515
Cca02g01005 794 SMART arm_5 578 618 IPR000225 GO:0005515
Cca02g01005 794 SMART arm_5 537 577 IPR000225 GO:0005515
Cca02g01005 794 SMART arm_5 660 699 IPR000225 GO:0005515
Cca02g01005 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 589 631 IPR000225 GO:0005515
Cca02g01005 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 671 712 IPR000225 GO:0005515
Cca02g01005 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Cca02g01005 794 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Cca02g01005 794 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Cca02g01005 794 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 788 - -
Cca02g01005 794 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Cca02g01005 794 Gene3D - 484 644 IPR011989 -
Cca02g01005 794 Gene3D - 645 788 IPR011989 -
Cca02g01005 794 SUPERFAMILY ARM repeat 502 780 IPR016024 -
Cca02g01005 794 SUPERFAMILY RING/U-box 240 316 - -
Cca02g01005 794 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01005 Cca-Chr2 26576310 26581895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01005 7 794 U-box Gene Family AT3G54790 53.885 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01005 - - gmx:100800949 1309.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01005 02 26576310 26581895 Cca02g01005 02 26576310 26581895 ECH