Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01003 ATGGGTCTAAGAGACATTGGTGCTTCACTGCCCCCTGGGTTTCGGTTCTATCCGAGTGATGAGGAGTTGGTCCTTCATTATCTTTACAAAAAGGTCACAAATGAGGAAGTTCTCAAGGGTACCTTGATGGATATTGACTTGCACACGTGCGAGCCATGGCAACTCCCTGAGGTGGCTAAGCTCAATGCAAACGAATGGTACTTCTTCAGCTTCCGTGACCGTAAATATGCAACCGGTTTTCGGACCAATAGGGCAACGACATCTGGCTATTGGAAAGCAACGGGGAAGGATCGTACGGTGTTTGACCCCGCCACGCGTGAGGTTGTAGGAATGAGGAAGACGTTGGTGTTCTACAGGAACAGAGCTCCCAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGCTTGGAGACGCCACACATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGAAAAACAGATAACAGTGCCAAACTCATGTACGAGACCACGGTTCCATCCCTAACTTTGTCATCACCAACAAACCAAACCACACCGGTTGGGTATAACCAACTTGTCCCATTCTCCTCCTCAATGGGAACCcatcatcattatcatcatcatcaAAACCAAAACCAAAACCAAAACTCTTTGATGAGTCTCCTTCAATTTTCGAGGGAAACAAACACCAACTCTAGCACCGTCACTCAGATTAGTCCCAAATGTGATGATGGCTATGAGTTCTTATGGGACATGGATCTCGATGATGGCGTGGCCTCCAACATGGACGGAATGAGATTCGAGGTTGATAATAATAGTGTGGTCTTGATATGA 831 0.4609 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKVTNEEVLKGTLMDIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPATREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTDNSAKLMYETTVPSLTLSSPTNQTTPVGYNQLVPFSSSMGTHHHYHHHQNQNQNQNSLMSLLQFSRETNTNSSTVTQISPKCDDGYEFLWDMDLDDGVASNMDGMRFEVDNNSVVLI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01003 276 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Cca02g01003 276 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 271 - -
Cca02g01003 276 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Cca02g01003 276 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Cca02g01003 276 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Cca02g01003 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01003 Cca-Chr2 26468149 26473839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01003 6 216 NAC Transcription Factor Family AT1G56010 47.414 7.48e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca02g01003 NAM 9.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01003 - - ccaj:109788642 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01003 02 26468149 26473839 Cca02g01003 02 26468149 26473839 ECH
Cca03g02217 03 42945875 42962138 Cca02g01003 02 26468149 26473839 PCT