Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00998 ATGGAGGAAGAAGAGGATCGAATTTTGCTCTCTACTCTGGGCGTAAAGTCTGCCAATCCCGAAGACATTGAACGCCACGTTTTGGAAAAGGCTAGGAATGATTCAGTGGCCGTTACTGAAGCCGAAGGTAGCGCCAAGGAAGAACGTTCTGATTTACCTGAAAATGTTGATCCATCGTTTACTGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCTATCCAATTTGAAATTGACGCTGTTGCCTCCACTGTTGAAGAGTTGAGTAGTGTTGAAAATAATGCAGAGTGTAATGATGTTGGTGAGGAAGGCTTGGGGCGAGGGAATGCCGAGGGTGATTCTTCCGGTGATTCTAATCTTCAGCGTGTTCTTGCTGCCGATAGATTGAGGAGCCTGAAGAAGACAAAAGCTCAATTGGAGAAAGAGCTTTTGAATTTGTCAGAGGATAATGCTTCCGTAAGCGCTCAGAATGAAGAATTGATACTGAGTATAGTTAGGGAAGAACGGAAATCAAAGAGGAAGGTTAAAGAAGATAAAAAGTCGAAAAAAAGCACGGGAAAGCGGCAAAAGAAAGTAACGTttggtgatgatgttgattttgatgctgttctggatgCAGCCTCTGCAGGCTTTGTCGAAACAGAAAGGGATGAACTGGTCAGAAAAGGAATTTTAACCCCTTTTCACAAGCTAAAGGGCTTTGAGCGCCGCTTTCAACAACCTGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATGCCAGTGATCTTGCTTCTGCCAGTGTTGAAAGAGCTGCCAGATCCATGTATGAGGCAGCAAGATCGCGCCCAACCACCAAGCTGCTTGAGCCTGAAGCTGCACCGAAGCTTGATGCACCCACTTTTCCTTTTCGCAGGCTCAGAAAACCACTAATACCTTCCAAACCTGTAGACAAAGAGGTGGAGCTAAATAAAGATTCAAAAAAGAAAAAGAGGCGGCCTCTGCCTGGTAGGAAGTGGACCAAGCGTGTTTCTTGTGAGGATACACATCTGGAAGAAAGTGAAAACGCAAATGGTTACTTGGATACTTCCAGTTGTGAAAATTTAGAAGAACAAGATGTTGAACTTGATGATCATGAATCTTCTTATGTAACATTAGAAGGTGGACTGAAAATCCCTGATAACATATTTGAAGGTCTCTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGACTTGGTAAAACTGTCCAGATCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCTTGCGACAATGGAAAAGGGAAGCTAAAAGGTGGTATCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTGCTCCAAGAAAGAAGCGAGCTAAATCTGAAGAAACAGACTCTGAAAGCAATAGTTCAAGTGACAATGATTGTGAGAGAAATGTGCCATCTAGAAGTACAAGAAAATGGGAATCCCTGATAAATTGTGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAGTATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGTTCACCTATTCAGAACAAACTGACAGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCCCCATTACAAGTATCTACAGCATACAGGTGTGCCGTGGTACTGCGTGATTTGATCATGCCTTATCTTCTCCGACGCATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCACGGATCCAGATTACGGAAATCCAGTACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGATATTTTTGAGAATTTTTTGACAACATCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGACTCAAGTGAAATATTTATTTTCATTTTAACAACGAAAGTTGGGGGTTTGGGGACGAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGAGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGGTATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACACTTAATGTGGACGGAGAAACTGGGTCAACTGAAACATCAAATATTTTCGGTCAAATATCTGAAGAAGTAAATATCATTGGAACACATAAAGAAAATAAGGATAAGTATAAACGTAGCCAAAATGCTGAACTGAATTGTGAAGATGTTGCAGTTGGTAATGATGACAAATCAGAGAGAGGATCTTCAAGGGGAAAGGGGAAAGTGAAGGTTGAACATAGTAATGGGGTTGATGACGAAACAGATATACTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCACGATTTGATCATGGATGCCCATGATGAGGAAAAGATGAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCTGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGAGAGCATATCTGTTCCAACATGGACAGGAAGGTCAGGAGCTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCCCCAGTTGGTAAATAATTGCAAAGGATCTGATGAATTACCCAGCAGCAATGGAACTAACAAGTTTAATGGAATTGCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCAGCTGAACTATTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGCTGCTGGGGTTGAACATCAGTTGTCAAGTTCCAGTAGTCAAGCAAGATCTATGGATGTTAGATCTTCTAGGGCTGCTGAAACTTCATCTGGATTACAACCTGAAGTATTGATTCGGAAAATCTGTACTTTTATACAACAGCGAGGTGGCAGCTCCGATTCAGCCAGCATAGTTCAGCATTTCAAGGACCGTATTCCCTCAAAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCGAATGGATCTTATTGGGTTCTGAAACCAGAGTATCAATTCTGA 3669 0.4159 MEEEEDRILLSTLGVKSANPEDIERHVLEKARNDSVAVTEAEGSAKEERSDLPENVDPSFTAKAELHQKLRAIQFEIDAVASTVEELSSVENNAECNDVGEEGLGRGNAEGDSSGDSNLQRVLAADRLRSLKKTKAQLEKELLNLSEDNASVSAQNEELILSIVREERKSKRKVKEDKKSKKSTGKRQKKVTFGDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPETSTSHNAAEEENASDLASASVERAARSMYEAARSRPTTKLLEPEAAPKLDAPTFPFRRLRKPLIPSKPVDKEVELNKDSKKKKRRPLPGRKWTKRVSCEDTHLEESENANGYLDTSSCENLEEQDVELDDHESSYVTLEGGLKIPDNIFEGLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQILSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKRWYPKFHVELLHDSAQDSAPRKKRAKSEETDSESNSSSDNDCERNVPSRSTRKWESLINCVMRSESGLLITTYEQLRVLGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFTDPDYGNPVRSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNDSSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFGQISEEVNIIGTHKENKDKYKRSQNAELNCEDVAVGNDDKSERGSSRGKGKVKVEHSNGVDDETDILKSLFDANGIHSAMNHDLIMDAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSHESISVPTWTGRSGAAGAPSSVRRKFGSTVNPQLVNNCKGSDELPSSNGTNKFNGIAAGASAGKALSSAELLAQIRGNQEKAIAAGVEHQLSSSSSQARSMDVRSSRAAETSSGLQPEVLIRKICTFIQQRGGSSDSASIVQHFKDRIPSKDLALFKNLLKEIATLHKGSNGSYWVLKPEYQF 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00998 1222 MobiDBLite consensus disorder prediction 235 262 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 952 977 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 478 494 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 98 118 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 1127 1149 - -
Cca02g00998 1222 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Cca02g00998 1222 Gene3D - 361 653 IPR038718 -
Cca02g00998 1222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 311 332 - -
Cca02g00998 1222 CDD DEXHc_ERCC6 393 603 - -
Cca02g00998 1222 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 249 1125 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 953 977 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 33 54 - -
Cca02g00998 1222 CDD SF2_C_SNF 734 861 - -
Cca02g00998 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Cca02g00998 1222 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Cca02g00998 1222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Cca02g00998 1222 PANTHER SNF2/RAD54 FAMILY MEMBER 249 1125 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 33 57 - -
Cca02g00998 1222 Coils Coil 121 155 - -
Cca02g00998 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 916 IPR027417 -
Cca02g00998 1222 SMART helicmild6 767 850 IPR001650 -
Cca02g00998 1222 Coils Coil 1006 1033 - -
Cca02g00998 1222 Gene3D - 660 951 IPR027417 -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 237 254 - -
Cca02g00998 1222 SMART ultradead3 389 612 IPR014001 -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 268 287 - -
Cca02g00998 1222 MobiDBLite consensus disorder prediction 478 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00998 Cca-Chr2 26348200 26355149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00998 693 904 RAD5 or RAD16-like Gene Family AT5G22750 30.698 2.91e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca02g00998 SNF2_N 8.1e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00998 K10841 - gmx:100820025 2076.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00998 02 26348200 26355149 Cca02g00998 02 26348200 26355149 ECH