LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g00993	ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAAAACCAGGGCTGGTGCGAAGAAAAAGGAGGAGGAGGAGGATAGTAATGGAGGAAACCAGGATTTGAGTGCAGCAGTGGATGAAGCAGCGCTTTCCAGTGTCACCAAGCAGAAGGTGGCAGCAGCAAAGCAGTACATTGAAAACCATTACAAGGAGCAAAGGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAGGAAGTTGGCTGATGCTGATGTCTCCGAGGAGGATCAAAACAATCTGCTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTAACAATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAGACAAGCGGTCATGTATATGCAATGAAGAAGCTTAAAAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAGCATGTTAAAGCTGAAAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATTGTCAAACTTTATTGTTCTTTTCAGGATGATGAATATTTGTATCTTATTATGGAGTACCTACCGGGTGGGGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAATTCTGGCCATCGAATCtatacataaacacaattatatacatagGGATATCAAGCCAGACAACTTATTACTTGATAGATATGGACACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGTACACTTGAAGAAAAGGATTTTTCTGTGGGTCAGAATGTGAATGGATCTACACAAAATGAAGAGCGCACAGCTCCCAAACGCTCACAACAAGAACAACTGCTACATTGGCAAATGAACAGGAGGACACTTGCTTATTCCACAGTTGGTACACCAGATTATATTGCCCCAGAAGTTCTTTTAAAGAAAGGTTATGCGATGGAATGTGATTGGTGGTCACTCGGAGCTATTATGTACGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCGATGTTAACTTGTAGGAAGATAGTAAATTGGAAAACTTACCTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTCTGTGCAATGTCAATCAAAGGCTGGGGTCAAAAGGTGCATATGAAATAAAGGCTCATCCATTCTTCGAAGGTGTTGACTGGGATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTTAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAACTCAATCGTCATCAAGATCTGGTCCATGGAGGAAGATGCTTTCGTCTAAGGACTTGAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGATTATCCAGTTCCTGGGATGGCTGAACTGAAGAAGAAACCGTCCAAGCCAAAGAGGCCATCCATCAAATCACTTTTTGAAACACCAGAAGAGACTGATATGTCTGCAAATAATGAAGGAAGCTTTTTAAAGCTCTTGCCCCCCCAGTTAGAGGTATCATCTCATCGTGACAAGAATCTTCCTCCCAGGCCCTAA	1668	0.4059	MDSARSWLQKFQPRDKTRAGAKKKEEEEDSNGGNQDLSAAVDEAALSSVTKQKVAAAKQYIENHYKEQRKNLQERKERRTILERKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETILAIESIHKHNYIHRDIKPDNLLLDRYGHLKLSDFGLCKPLDCSTLEEKDFSVGQNVNGSTQNEERTAPKRSQQEQLLHWQMNRRTLAYSTVGTPDYIAPEVLLKKGYAMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKTYLKFPEEARLSPEAKDLISKLLCNVNQRLGSKGAYEIKAHPFFEGVDWDKLYQMEAAFIPEVNDELDTQNFEKFDESDSQTQSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYPVPGMAELKKKPSKPKRPSIKSLFETPEETDMSANNEGSFLKLLPPQLEVSSHRDKNLPPRP	555

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g00993	555	MobiDBLite	consensus disorder prediction	1	37	-	-
	Cca02g00993	555	MobiDBLite	consensus disorder prediction	9	31	-	-
	Cca02g00993	555	SMART	pkinase_C_6	422	486	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Cca02g00993	555	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	1	526	-	-
	Cca02g00993	555	Coils	Coil	65	85	-	-
	Cca02g00993	555	Pfam	Protein kinase domain	124	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca02g00993	555	ProSitePatterns	Protein kinases ATP-binding region signature.	129	152	IPR017441	GO:0005524
	Cca02g00993	555	SUPERFAMILY	Protein kinase-like (PK-like)	96	475	IPR011009	-
	Cca02g00993	555	ProSiteProfiles	AGC-kinase C-terminal domain profile.	422	494	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Cca02g00993	555	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Cca02g00993	555	MobiDBLite	consensus disorder prediction	500	555	-	-
	Cca02g00993	555	Gene3D	Transferase(Phosphotransferase) domain 1	207	439	-	-
	Cca02g00993	555	PANTHER	SERINE/THREONINE-PROTEIN KINASE	1	526	-	-
	Cca02g00993	555	ProSiteProfiles	Protein kinase domain profile.	123	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca02g00993	555	Gene3D	Phosphorylase Kinase; domain 1	121	450	-	-
	Cca02g00993	555	MobiDBLite	consensus disorder prediction	284	303	-	-
	Cca02g00993	555	CDD	STKc_NDR_like	121	485	-	-
	Cca02g00993	555	Pfam	Protein kinase C terminal domain	440	484	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Cca02g00993	555	SMART	serkin_6	123	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g00993	Cca-Chr2	26256021	26265483	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g00993	1	521	AGC Kinase Gene Family	AT2G20470	78.967	0.0	851

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Cca02g00993		Pkinase	3.1e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g00993	K08790		-	gmx:100779528	1009.98

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca02g00993	02	26256021	26265483	Cca02g00993	02	26256021	26265483	ECH
	Cca02g00993	02	26256021	26265483	Cca03g02221	03	43009597	43014642	PCT