Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00992 ATGATGAAAGTGGGGTTTGAAGTGGTTCATGCAAATCCAAACATGATTCGTACACACATGCATGAAACATGGGATCACTACTCAAATATTATTACTACTACCTTGCCATTTTCAGCTCCAACCCCATCAAGTCCATATCCAAAGCCAGCAACAGAAAACCTAAACTTGGGGCAGAATAATGAACTCTCTGATTGGATGGAGGAGCACATTAGTGACATCACTAAGCACCTTGTTGAAGACATGCCACAAACCACTTCTGATCATACCTTGATGGCTAATACCCCAACAAGGGTTTCCCTTTCTCATCACAACCTTGTTATTCCCTCTCTTTCACCCAGCTTCACTCAAAGAAAACTCTCATGTTCTAGACCCCAATTTGACTCCTTCACCAACGACCCTCCAAATAACAACTTCAATCACCACCTTCAAACAAACACTTCAAGTTTAGATCACATTCATAACCACAATGTTTGTGACCAAGGGTTGAACCTCATAACCCTCCTAATGGAGTGTGCAGTGGCAATCTCAGTTGAAAACCTAGGTGAGGCTCATAGGATGTTGCTTGAGCTAACACAAGTGGCATCACCCTACAAACCATCATGTGCTGAGCGTGTTGTTGCTTACTTTGCAAAGGCCATGGCTAGCAGGGTGATGAACTCATGGCTTGGTGCGTGTTCCCCTTTGGTTGATCACAAGAGCATCAACTCATCATTCCAAGTGTTCAACAACGTTTCCCCTTTCATCAAATTTTCCCACTTCACTTCCAACCAGGCAATTCTCGAGGCAGTGAGCCATTGTGAGTGCATCCACATCATTGACTTGGACATCATGCAGGGTCTGCAATGGCCAGCTTTTTTCCACATATTAGCCACCAGAATGGAGGGTCCACCACAGGTCACAATGACAGGTATTGGAGCCTCAATGGAACTCCTTGTTGAGACAGGAAAACAGCTCTCAAACTTTGCAAGAAGGCTCGGCATGTCACTCAAGTTCAACCCCATTGCAAGCAAGTTTGGAGAGGTTGATGTGTCCATGTTGCAAGTGAAGCCTGGTGAGGCTGTGGCAGTGCATTGGTTGCAGCATTCACTCTACGATGCAACTGGTCCTGATTGGAAAACACTGAGGCTCCTTGAGGAGTTGGAGCCAAGAATCATCACATTGGTGGAGCAAGATGTGAACCATGGAGGGGCTTTCTTGGATCGGTTTGTGGCCTCCTTGCACTACTACTCTACACTCTTTGATTCTCTTGGAGCATACTTGCACCATGATGATTCTAACAGGCACCGTGTGGAGCATGGACTTCTCTCTAGAGAGATCAACAATGTGTTGGCCATAGGGGGGCCTAAGCGGAGTGGTGAAGAAAAGTTTAGGCAGTGGAGAAGTGAGCTTGCAAGGCACTGTTTTATGCAGGTTCCAATGAGTGCCAATTCAATGGCTCAAGCGCAGTTGATACTGAACATGTTTTCACCAGCTTATGGGTATAGCCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACAAGCTTGTACACAGCTTCTGCATGGACCTGCACTGCTTCTAGATAG 1575 0.459 MMKVGFEVVHANPNMIRTHMHETWDHYSNIITTTLPFSAPTPSSPYPKPATENLNLGQNNELSDWMEEHISDITKHLVEDMPQTTSDHTLMANTPTRVSLSHHNLVIPSLSPSFTQRKLSCSRPQFDSFTNDPPNNNFNHHLQTNTSSLDHIHNHNVCDQGLNLITLLMECAVAISVENLGEAHRMLLELTQVASPYKPSCAERVVAYFAKAMASRVMNSWLGACSPLVDHKSINSSFQVFNNVSPFIKFSHFTSNQAILEAVSHCECIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTGIGASMELLVETGKQLSNFARRLGMSLKFNPIASKFGEVDVSMLQVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGAFLDRFVASLHYYSTLFDSLGAYLHHDDSNRHRVEHGLLSREINNVLAIGGPKRSGEEKFRQWRSELARHCFMQVPMSANSMAQAQLILNMFSPAYGYSLAQVDGTLRLGWKDTSLYTASAWTCTASR 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00992 524 Pfam GRAS domain family 164 519 IPR005202 -
Cca02g00992 524 PANTHER OS05G0485400 PROTEIN 24 520 - -
Cca02g00992 524 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 520 IPR005202 -
Cca02g00992 524 ProSiteProfiles GRAS family profile. 155 519 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00992 Cca-Chr2 26249916 26251755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00992 142 519 GRAS Transcription Factor Family AT3G54220 52.821 3.15e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca02g00992 GRAS 3.5e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00992 - - gmx:100775656 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00992 02 26249916 26251755 Cca02g00992 02 26249916 26251755 ECH