Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00986 ATGAAGTGCCTACGGTCGGGGGAGTCGTTGGGAGGAGTTGATGAATTGTTTCCTTCGTCTGGATCTCTTGCAAGTGCAGCCAAGGACTTTTCTGCTAGTGGACATTCTTTCCTTGCTGAACATTTTGATAAGAAGCCGGACACTGGCAACATTGAAGAAGCTGAATCGTCCTTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTGCATGTCTTTGAGGGAATAGATGTAGGTGTTGTGACTCCTAAGATCAAAGTTGCCCTTTCCAGAAGTAGAGAACGCCGCAAGAGGCATTCCCAAAATTATGCTGAATCACAAATGTCTATACATTCTGTTGGCTTACTATTGGAAGCTGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGAAAGGTTTAAAGAGGCTGCCCAATCATGCAAAGTTATTCTGGATATAGTGGAGTCTTCATTGCCTGAAGGCTTGCCCGATAACTTTGGCTCTGAATGTAAATTGCAGGAGACCCTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTTCACGTGAAGCTATTTTGTCTTACCGACGAGCACTACTTCATCATTGGAATCTTGATGCAGAGATTATAGCAAAGATTCAGAAGGAATTTGCTGTTTTTCTCCTTTATAGCGGAGGAGAAGCAACACCACCGAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGTTAAGAAAAGTCACTCTAAACAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTATCTGTTTCAGGAGATTTGACAGCCTTAGCCAATCAATTAGAAGAATTGCTTCCTGGGACTATCCATCGAAGTGAAAGGTACTTTGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTTAGAAAGTTGTTGAGTAATAGAGAGGGCCAACACCATGTGCCTGGTTTGGTAATGGCTTCTAAGATTTGTTGTGAGAGCTCTACTCTTGCAGAAGAAGGAGTAAGCTTTGCTCAGCTAGTGCTTCAAAACTTGGATGGAAGATGTGATAAGCTAGAAGATCTTGCCAATTTCTTTCTCGGTGTTTCACTTTCAGCACACTCGAAATTGGCCATTTCTGATTCTGAGAGGTTAAAGAGACAATCTGAGGCACTTCGTGCCCTAGAAACTGCTGGCAGAACGAGAAACCCCCTTGTACTATACCATCTCAGTTTAGAATATGCAGAACAAAGGAAGTTGAATTCTGCACTTTATTATGCTAAGTGCTTTCTAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGCTATTGTTAGCCCGGATATTGTCTGCTCAAAAACAGTTTTTGGATGCTGAATCTATTATTAATGCTGCTTTGGATGAAACTGGAAAATGGGATCAGGGTCATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAGTGCCATTGAGACATATACTCAAATTCTTGCAGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCAGGGAAGAAGCTATATAAGGATAATAGAGATCGTGCTAGGAACTTAGAAGTGGAAATATGGCATGATATTGCTTATGTATATATTAGTCTTTCACAGTGGCATGATGCAGAGATGTGTCTTTCAAAATCCAAGACCATCAAACCACTCTCTGCTTCTAGATGTCACGCAATAGGCATAATGTACGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTTGGTGATGCTTTGGACATTGATCCTTGCCATGTCCTCAGCTTAATCTCCACTGCTCTAGTTCTTAAAAAATGTACTAATCAATCGAATCCAGCAGTTAAAAGCTTTCTGATGGATGCACTACGGCACGACAGATTCAGTGCTTCTGCATGGTATAATCTTGGCCTTCTTCTCAAGGCTGAGGGTACACCATCATCATTAGTTGAAGCTGCGGAGTGTTTTCAAGCAGCACACTTTCTTGAAGAATCTGAACCTGTTGAGCCTTTCAGATGA 2136 0.4129 MKCLRSGESLGGVDELFPSSGSLASAAKDFSASGHSFLAEHFDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDVGVVTPKIKVALSRSRERRKRHSQNYAESQMSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGLPDNFGSECKLQETLSKAVELLPELWKLADCSREAILSYRRALLHHWNLDAEIIAKIQKEFAVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPGTIHRSERYFALALCYYGAGKDLVALDLLRKLLSNREGQHHVPGLVMASKICCESSTLAEEGVSFAQLVLQNLDGRCDKLEDLANFFLGVSLSAHSKLAISDSERLKRQSEALRALETAGRTRNPLVLYHLSLEYAEQRKLNSALYYAKCFLKLEGGSNVKGWLLLARILSAQKQFLDAESIINAALDETGKWDQGHLLRTKAKLQIAQGQLRSAIETYTQILAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDIAYVYISLSQWHDAEMCLSKSKTIKPLSASRCHAIGIMYEAKGLYKEALKAFGDALDIDPCHVLSLISTALVLKKCTNQSNPAVKSFLMDALRHDRFSASAWYNLGLLLKAEGTPSSLVEAAECFQAAHFLEESEPVEPFR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00986 711 PANTHER PROTEIN NPGR2 1 711 - -
Cca02g00986 711 Pfam Tetratricopeptide repeat 600 630 IPR019734 GO:0005515
Cca02g00986 711 Gene3D Tetratricopeptide repeat domain 549 707 IPR011990 GO:0005515
Cca02g00986 711 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Cca02g00986 711 PANTHER PROTEIN NPG1 1 711 IPR043376 -
Cca02g00986 711 SMART tpr_5 509 542 IPR019734 GO:0005515
Cca02g00986 711 SMART tpr_5 438 471 IPR019734 GO:0005515
Cca02g00986 711 SMART tpr_5 134 167 IPR019734 GO:0005515
Cca02g00986 711 SMART tpr_5 319 352 IPR019734 GO:0005515
Cca02g00986 711 SMART tpr_5 599 632 IPR019734 GO:0005515
Cca02g00986 711 SMART tpr_5 669 705 IPR019734 GO:0005515
Cca02g00986 711 SMART tpr_5 473 506 IPR019734 GO:0005515
Cca02g00986 711 SMART tpr_5 565 598 IPR019734 GO:0005515
Cca02g00986 711 Gene3D Tetratricopeptide repeat domain 104 544 IPR011990 GO:0005515
Cca02g00986 711 SUPERFAMILY TPR-like 511 683 IPR011990 GO:0005515
Cca02g00986 711 SUPERFAMILY TPR-like 420 535 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00986 Cca-Chr2 26145235 26151146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00986 1 711 Calmodulin-binding Proteins AT4G28600 58.921 0.0 778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00986 02 26145235 26151146 Cca02g00986 02 26145235 26151146 ECH
Cca02g00986 02 26145235 26151146 Cca03g02231 03 43155400 43160666 PCT