Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00982 ATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAACATGGGGATGTCTGGAGCATTTTCTTCATCCTTGTCAGTCCTTCCAATACCCCCGGAAGAGATGTATCCCAAGCTGCCTGAATCACAGTTGGATTTTGTAGAACAAGAGCTTATGACAATGCCTCTTACTCATTCAAGTTATTTAAATTCCAGTGGAGTAGTTGGGCATATTTTTTCGTCTTCACCTGGATATTCAACTGATCTTCATCATTCATCTCTTTCACCTGATGAAAAAAACTCAACTAATGCTCATTTTATTTCACAATCATCAACTAACACAGCCCAATTTCCATTATCTTATTCTTCAAATGCTGGACCACCAACTTCAGCAGCACCAAGCCATTATTCCAAAGAAAACAGTGCTTCCTGGCATGCAGATCCCCTGCCAAGCTTTCTGGATTTTCCTGAAAATGGCTCTATTAATAATAATCGGGTAGAAAGTAGTGCCTGCCCTATCATTCCATCTGAGGAGTATTGCAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGAAGCTTTGACTTCTAATTGGGATGACCTTCTTACAGACAACATTCAAGATCTTGAGCCAAAGGTGCCATTCCAGGTTTCAAAACCATTTTCACAGTTTCCAGGAAATCAATCCCAAGGCTATCAACAACCTCCTGCTGCATCATATGGAGAAAATTGCACTGGTGCTGCCCTCGCTTCCTCGGCAAATTCTGCTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGGAGTGAAAGAGCCACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTATGGAGAAAAAAACAAGTTCCGTTGAAGACATGTCATCTCTTGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAACTTGAGATTCAAAGAAATCTTCAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAAATGATGTTTGAGAAGCAATGTAAACCTGGAATGGAAACGTTTAAGACACCATCATCTACCATTGAGACTCCATCTGGAGTGTCTTCAAATACTACGAGAGATTTCACTGCCATAAATGAAACGGAAGCATCACAAGCGGGCCATTTCAGGTCAGGATCTGATCAAGCTAACCGCAGTACCACAGTTGAGGAAGGCTCACTAGAAAAGGGTGAGAAGCCCGATTCTCCCAAAACTCTACATGCTATTGCTAATGACGATAGTGCACAAGCCCCAAAGCGTCAAAGAACAGAGTAA 1443 0.4255 MEAHPTFSIERSKQLNNMGMSGAFSSSLSVLPIPPEEMYPKLPESQLDFVEQELMTMPLTHSSYLNSSGVVGHIFSSSPGYSTDLHHSSLSPDEKNSTNAHFISQSSTNTAQFPLSYSSNAGPPTSAAPSHYSKENSASWHADPLPSFLDFPENGSINNNRVESSACPIIPSEEYCKQNDWQEWAERLISDDEALTSNWDDLLTDNIQDLEPKVPFQVSKPFSQFPGNQSQGYQQPPAASYGENCTGAALASSANSAPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVMEKKTSSVEDMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGMETFKTPSSTIETPSGVSSNTTRDFTAINETEASQAGHFRSGSDQANRSTTVEEGSLEKGEKPDSPKTLHAIANDDSAQAPKRQRTE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00982 480 MobiDBLite consensus disorder prediction 395 446 - -
Cca02g00982 480 MobiDBLite consensus disorder prediction 113 137 - -
Cca02g00982 480 Pfam MYB-CC type transfactor, LHEQLE motif 345 391 IPR025756 -
Cca02g00982 480 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 50 480 IPR044848 GO:0003700
Cca02g00982 480 MobiDBLite consensus disorder prediction 447 462 - -
Cca02g00982 480 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 50 480 - -
Cca02g00982 480 Gene3D - 259 318 - -
Cca02g00982 480 MobiDBLite consensus disorder prediction 113 138 - -
Cca02g00982 480 Pfam Myb-like DNA-binding domain 262 313 IPR001005 -
Cca02g00982 480 MobiDBLite consensus disorder prediction 394 480 - -
Cca02g00982 480 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 317 IPR017930 -
Cca02g00982 480 SUPERFAMILY Homeodomain-like 258 314 IPR009057 -
Cca02g00982 480 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 260 314 IPR006447 GO:0003677
Cca02g00982 480 Coils Coil 348 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00982 Cca-Chr2 26064259 26073755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00982 53 389 G2-like Transcription Factor Family AT4G28610 51.297 4.73e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca02g00982 Myb_DNA-binding 9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00982 - - gmx:100793593 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00982 02 26064259 26073755 Cca02g00982 02 26064259 26073755 ECH
Cca02g00982 02 26064259 26073755 Cca03g02242 03 43262642 43269323 ECH
Cca03g02242 03 43262642 43269323 Cca02g00982 02 26064259 26073755 PCT
Cca03g03069 03 52125337 52130321 Cca02g00982 02 26064259 26073755 PCT