Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00977 ATGGCACCAAATAAAAGGGTGGGTGCGGCCTATCGTGCAATGGCAAGTCTTGGTGTTGATGAATCGAAAGTGAAATCAGTGTTAAAGAAACTCCTCAAAGTGTATGATAAAAATTGGGAGCTTATCGAGGAAGAAAATTATAGAGTTCTAGCAGATGCTATATTTGAGGATGATGACAATATGGTTCCTGAACTGAAAAGGAAGAGCCAGACAGTAGATGCGCATAACACTCATCACTCTTTGTCTTCTTCCTTATCAAACAACCTAGAAGAAGAAACAGAGTGTGAAGAGGCTCAGATGCATGTTGAAACAGCTCGACCTTTGAAAAGGCTGCCATTAAGAGGCCAAGAGATTCAGCCTTTGCATCCTTCAACTAATAGTGCTCCCAGCCCTCCATCAAAAAAGTTTAAATCAGAAGATAGTGGATTACCTGGGGGTTGTTCTGGGAAGAAACCTCAAAACAAAGCAGTGTCATCTGATGGGAATCCAAGAATTGAAGCACATGTGTCACCCCGAGATGGCATTGTTGATAAGGGAAAGCAGCCTGCATCAACCCAAGTTTCTCACAGAGGAAGAAGACTTGCATCTGAAAGAGTGTCCCCATCGATACCATCTAAAGAACCAACAGTTGAACCGGGAAAAATTCTGTTGCCAAACAACCAAATGTCTCGAACTCATGTACTGCTCGTACCCAAGGACGAGCCTGTTGATGAATTGCCTGATTATGAGATGCCCATTGCAGTGATTCCTCCTGAGCCATCGAATGTAAGGGACTCGTCAATGAAAAACGGTGTAGCTGGAAAGCATGGTGACCATGTTACCATGTCATCATCACAACACAGGGGAAGAGTTAGAGATGAAGATATTCCTACCTCAAATGGAGAGGCAACTTGTAATGTTGAGATAGCATCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTGCAGCTCAGCTCTTCAGGGATCAGGTTTTCATATGCCTAGTCAAGATCAACTTCTACAAAAGATAGAGGATAAATGTCTACGTTCATATAAAATCATTGACCCAAAATTTTCTGTTTCGAAACTGTTGAGAGATATATGTGATTGCATGTTGGAATTCAGAACTAATTCAAGTGATGACTCACGAGAAGGCTCTATAATAAGATCAGGTGCTGATGTGTCAAAGGAGTCACAGGAAAATCATGGCACACCAAATGTGGGAGAAAGTAAAGATTTGGACATGTTGTCTGGATCTTCAAACGGATCAATCGATGTTAATGCTTCTACTGGTTTGGTTTCCCTTTCTCCTCGAAGACCTTTTTCACTCACCCACCTGAGTGGGATGGATGATGCTGTCCTAGTTTCCAAGATGGACATAACTGATTTTTCACAAAATAATGGCAGAAAGGAGCCAGAAGGTCCCACCTCTCCAAATTCACGTAGTTTAGTGGTTGTTCCTCAGCATAACCTTACAACTGATGATATGAGGTCTATTCATGATGTAAATGACCTTACTAAAGGAGAAGAAGATGTTAAAATTTCATGGGTGAATGAAACTACTAATGATTTTGCACCTCCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTATGCATTTCTCTATCACATATTGGTGGTGAGGACTGTTGTTCGACTTGTATGGGCAATTGTATCTTGTCTTCTACACCCTGTGCTTGTGCAAATAAAACTGGCAGTGGATTTGCATACACTGCTCAAGGCCTACTGAAGGAAGAATTATTAGAAGAGTGCATTGCCATCAGTCACAACCCTCAACAAAATTTCTTCTATTGCAAAGATTGCCCACTGGAAAGATCTAAGAATGATGGTTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGCAAACAGTGTGGCAATAGGGTTATCCAGCGAGGAATAACTTGTAACTTGCAGGTATTTTTTACTTCAGAAGGAAAAGGATGGGGCCTTCGTACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCATTAAAGAGTTGCAAGAGAGGAACCTGAAGTGCAATGAAAATGGGAAATATACATACCCAGTTCTACTGGATGCAAATTGGGATTCAGGACATGTGAAGGATGAAGAAGCTCTATGCTTGGATGCAGCTTCATTTGGCAACACTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCTGTCGAAGTTGAGGATCCCAGTCATTACTACTATCATTTTGCCTTTTTCACTTCGAGAAAAATAGCAGCACGGGAAGAGCTAACATGGGATTATGGCATTGACTTTGATGACCATGATCATCTGGTCAAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGAGATCAAACAGATCTATTAGATCTGCCTCTAATGCAATATGA 2478 0.4116 MAPNKRVGAAYRAMASLGVDESKVKSVLKKLLKVYDKNWELIEEENYRVLADAIFEDDDNMVPELKRKSQTVDAHNTHHSLSSSLSNNLEEETECEEAQMHVETARPLKRLPLRGQEIQPLHPSTNSAPSPPSKKFKSEDSGLPGGCSGKKPQNKAVSSDGNPRIEAHVSPRDGIVDKGKQPASTQVSHRGRRLASERVSPSIPSKEPTVEPGKILLPNNQMSRTHVLLVPKDEPVDELPDYEMPIAVIPPEPSNVRDSSMKNGVAGKHGDHVTMSSSQHRGRVRDEDIPTSNGEATCNVEIASSTLGEVKLSLSCSSALQGSGFHMPSQDQLLQKIEDKCLRSYKIIDPKFSVSKLLRDICDCMLEFRTNSSDDSREGSIIRSGADVSKESQENHGTPNVGESKDLDMLSGSSNGSIDVNASTGLVSLSPRRPFSLTHLSGMDDAVLVSKMDITDFSQNNGRKEPEGPTSPNSRSLVVVPQHNLTTDDMRSIHDVNDLTKGEEDVKISWVNETTNDFAPPFNYIPQNLVFQDAYVCISLSHIGGEDCCSTCMGNCILSSTPCACANKTGSGFAYTAQGLLKEELLEECIAISHNPQQNFFYCKDCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELQERNLKCNENGKYTYPVLLDANWDSGHVKDEEALCLDAASFGNTARFINHRCFDANLVEIPVEVEDPSHYYYHFAFFTSRKIAAREELTWDYGIDFDDHDHLVKLFQCRCGSKFCRNMKRSNRSIRSASNAI 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00977 825 Pfam SET domain 665 786 IPR001214 GO:0005515
Cca02g00977 825 Gene3D SET domain 499 811 IPR046341 -
Cca02g00977 825 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 823 IPR025776 -
Cca02g00977 825 MobiDBLite consensus disorder prediction 386 400 - -
Cca02g00977 825 MobiDBLite consensus disorder prediction 265 292 - -
Cca02g00977 825 MobiDBLite consensus disorder prediction 94 110 - -
Cca02g00977 825 MobiDBLite consensus disorder prediction 68 216 - -
Cca02g00977 825 MobiDBLite consensus disorder prediction 119 134 - -
Cca02g00977 825 Pfam Ubiquitin-binding WIYLD domain 4 60 IPR018848 GO:0018024
Cca02g00977 825 SUPERFAMILY SET domain 506 809 IPR046341 -
Cca02g00977 825 Pfam Pre-SET motif 500 645 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00977 825 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 310 - -
Cca02g00977 825 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 381 822 - -
Cca02g00977 825 MobiDBLite consensus disorder prediction 274 290 - -
Cca02g00977 825 MobiDBLite consensus disorder prediction 457 476 - -
Cca02g00977 825 MobiDBLite consensus disorder prediction 372 415 - -
Cca02g00977 825 ProSiteProfiles Pre-SET domain profile. 552 650 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00977 825 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 310 - -
Cca02g00977 825 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 381 822 - -
Cca02g00977 825 ProSiteProfiles SET domain profile. 653 786 IPR001214 GO:0005515
Cca02g00977 825 MobiDBLite consensus disorder prediction 75 89 - -
Cca02g00977 825 CDD SET_SETDB-like 520 786 - -
Cca02g00977 825 SMART preset_2 496 637 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00977 825 Gene3D - 1 60 IPR043017 -
Cca02g00977 825 SMART set_7 653 792 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00977 Cca-Chr2 25983747 25990919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00977 629 786 C2H2 Transcription Factor Family AT2G23740 45.062 1.83e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca02g00977 Pre-SET 3.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00977 - - gmx:100778335 1215.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00977 02 25983747 25990919 Cca02g00977 02 25983747 25990919 ECH
Cca03g03067 03 52103524 52116349 Cca02g00977 02 25983747 25990919 PCT
Cca02g00977 02 25983747 25990919 Cca03g02245 03 43287606 43293151 PCT