Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00972 ATGTCAACGCTGTCCAAAGATGACAACTTGGTGCTTTCTTCGGAGGACTCTTCGTGCCCAGAAGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGCCTCTCTGGCTCTTCAAAGTCTCACCACCATGTCCATGCCcctcctcctcctcttcctcctcTTTCTTATGCTAGAATTTACACTGCTAGGGACTTTCcttcttcagcatcatcaccttcttcttcttcttcttcctctCCCAACTTCACTGCTGGCACCAAGAGAGCTGCTGATTCTCTTGCTGCCAATAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATAGAGTGAATAGCTGCAACTACAATAGCCATACAAAGTCACCAGAAGTATTTGACTCTGTGGCTGAGAAGAGTAAGAACAATACTACTGCAGTAAGGAAGAGTGCTGACAATGGCAATGATAATAACATTAATGCCAAAGAAAAAAGACACCTCAGGAGTTCCCTGTTTGTCAAGGTAAATATGGATGGGATACCAATTGGAAGGAAGGTCGATTTGAGTGCTCATAGTTCCTATGAAACCTTAGCGCAAACATTGGAGGATATGTTTAATGAATCAACTACAGTCATCACTTGCAAAGGATCAAATGGTGAGGACCATGGCATTATTATTGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCATTAGCTCAGTGAGGAGGCTAAGAATCATGAGAACATCTGAGGCTAATGGACTTGGACCTAGATTGGAAGAAAACATCAGACAGAAAAGTAAACCCATATAG 873 0.4009 MSTLSKDDNLVLSSEDSSCPEESELELGLGLSLSGSSKSHHHVHAPPPPLPPLSYARIYTARDFPSSASSPSSSSSSSPNFTAGTKRAADSLAANNRPSQVVGWPPLRTYRVNSCNYNSHTKSPEVFDSVAEKSKNNTTAVRKSADNGNDNNINAKEKRHLRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVITCKGSNGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFISSVRRLRIMRTSEANGLGPRLEENIRQKSKPI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00972 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 8 281 - -
Cca02g00972 290 Pfam AUX/IAA family 60 278 IPR033389 -
Cca02g00972 290 SUPERFAMILY CAD & PB1 domains 159 267 - -
Cca02g00972 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 281 IPR003311 GO:0005634|GO:0006355
Cca02g00972 290 ProSiteProfiles PB1 domain profile. 164 271 IPR000270 GO:0005515
Cca02g00972 290 MobiDBLite consensus disorder prediction 135 156 - -
Cca02g00972 290 MobiDBLite consensus disorder prediction 135 151 - -
Cca02g00972 290 MobiDBLite consensus disorder prediction 1 103 - -
Cca02g00972 290 MobiDBLite consensus disorder prediction 1 18 - -
Cca02g00972 290 MobiDBLite consensus disorder prediction 63 85 - -
Cca02g00972 290 Gene3D - 159 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00972 Cca-Chr2 25934679 25940103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00972 157 288 B3 DNA Binding Superfamily AT1G59750 33.582 7.40e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca02g00972 AUX_IAA 8.9e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00972 K14484 - gmx:100779400 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00972 02 25934679 25940103 Cca02g00972 02 25934679 25940103 ECH
Cca03g02251 03 43357811 43362141 Cca02g00972 02 25934679 25940103 PCT