Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00971 ATGCAGCTGAAAACTCAGTTTCTCTTCTACTTCTATTGCATTTGCTGTTTCTCTTACGGCTTTGCTGCTGCAGCACATGATGAAGCATCTGCTTTGCTTTCTTTAAAAGAAGGTCTTGTTGATCCATTGAATAGCCTGCATGATTGGAAATTGGTGGACAAAGCAGAAGAGAAGAATGCAACTCATTGTAACTGGACTGGTGTCCAGTGCAACTCAGGTGGAGCTGTGGAGAAGCTTGATCTCTCCCGCATGAATCTGAGTGGCATCGTGTCCAATGAGATACAAAGGCTGAAGAGTCTCACTTCTCTCAACTTGTGTTGCAATGGATTTTCCTCATCATTGTCATCCATAGCCAATCTCTCCACACTGAAGAGTCTTGATGTCAGCCAGAATTTCTTCACTGGTGACTTTCCATTAGGCCTCGGAAAGGCATCAGGACTAACGACCTTGAATGCATCCAGCAACAACTTCTCTGGTTTTCTTCCTGAGGATCTTGGAAATGTCTCTTCCTTGGAGACTTTGGATCTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCAAAATCCTTCAGTAAGTTGCACAAGTTGAAGTTCCTTGGTTTATCAGGGAATAATCTCACTGGGGAAATCCCAGGAGAGCTGGGGCAGCTTTCATCACTTGAGTGCATGATTATTGGATACAATGAATTTAAAGGAGGGATTCCAGCAGAGTTTAGAAATCTCACCAAGCTGAAGTATCTTGACTTAGCAGAAGGCAATCTAGGTGGTGAAATTCCAGCTGAGTTGGGGATGCTCAAACTGTTGAACACAGTTTTCTTGTACAAAAACAAATTTGAAGGCAAGATTCCACCAGCAATTGGCAACATGACTTCATTAGTGCAGCTGGATCTCTCAGACAACATGTTATCAGGAACTATTCCAGCTGAAATTAGTCAGCTGAAGAATTTGCAGCTTCTGAACTTCATGCGTAACCGGCTATCTGGTCCTGTGCCTTCTGGCCTTGGGGACTTGCCTCAACTAGAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGAAATTGCCTAGTAACCTTGGCAAGAATTCCCCATTGCAGTGGTTGGATGTATCATCCAATTTACTCTCTGGTGAGATTCCAGAAACTCTTTGCAACAAGGGCTATCTCACCAAGCTTATACTCTTCAATAATGTCTTCTTGGGTCCAATTCCAGCAAGCCTATCAACATGTCCTTCACTTGTTCGTGTTCGAATTCACAACAATTTTCTTTCTGGGACAATTCCTGTGGGTCTTGGGAAGCTTGGTAAGCTTCAGAGGTTAGAATTGGCTAACAATAGTCTCACTGGTGGAATTCCTGATGACATTGGTTCTTCTACATCCCTTTCTTTCATTGATTTTTCCAGAAACAACCTCCACTCTTCTCTTCCTTCAACCATTATTTCCATTCCAAATCTGCAAACTTTAATTGTCTCCAACAACAACTTGAGAGGGGAAATCCCTGATCAATTCCAGGACTGTCCCTCACTTGGTGTCCTTGATCTCTCATCAAATCGATTCTCTGGAAGCATTCCAGCAAGCCTTGCTTCATGTCAGAAATTGGTAAGCTTGAACCTACAGAATAATCAACTAACTGGTGAAATCCCAAAAGCATTGGCAAGCATGCCTACATTGGCCATTCTTGATCTTGCTAACAACTCTCTACACGGTCAAATACCTGAAAGCTTTGGTATGTCTTCAGCTCTGGAAACATTCAATGTTTCACACAACAAGCTAGAAGGTCCTGTCCCAGAAAATGGCGTGCTAAGAACAATAAACCTAAATGATCTTGCGGGAAATGCTGGCTTATGTGGTGGTGTTCTTCCTCCATGTGGCCAAACCTCAGCATATATATTAAGTCATGGGAGCTCACGTGCAAGGCACATTCTTGTAGGATGGATCATTGGAATATCATCAATACTAGCCATCGGCGTTGCAACTTTGGTAGCAAGATCTTTATACACAAGGTGGTACACTGATGGATTGTGCTTCGGAGAAAGATTTTATAAGGGTAAGAAGGGGTGGCCTTGGAGACTGATGGCATTTCAGAGGCTTGATTTTACATGTAGTGACATTTTATCCTGCATCAAGGAAACAAATATGCTTGGCATGGGAGCAACCGGGGTTGTTTACAAGGCTGAGATACCACAATCAAGTACCATTGTGGCAGTCAAAAAGTTGTGGAGATCAGGATCTGATGTTGAAGTAGGAGGTAGTGATGACCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGACATAGGAACATTGTTAGACTACTAGGCTTTCTTTACAATGACACTGATGTGATGATAGTTTATGAATTTATGCACAATGGAAACCTTGGAGATGCCCTACATGGTAAACAAGCAGGGAGATTGCTTGTAGACTGGGGTTCGCGATATAACatagctctaggaattgcacaaggacttgcttatcttcatcatgattgtcatccacctgtgatccatcgagacatcaagtcaaataatatactgcttgatgcaaatcttgaggcaaggatagcagatttcgggttggccaagatGATGCTCCGGAAGAACGAAACAGTCTCCATGATTGCTGGATCCTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAGGTGGATGAGAAGATTGACATTTACAGTTATGGAGTGGTTCTGTTGGAGCTTCTCACTGGAAAGCGGCCTTTAGATCCGGAGTTTGGAGAATCTATAGACATAGTAGGGTGGATTAGAAGGAAGATAGACAACAAATCTCCAGAAGAAGCATTAGACCCCAGTGTAGGAAACTGCAAGCATGTTCAAGAAGAGATGCTTTTAGTTCTTAGAATAGCACTTCTTTGCACTGCCAAGTTCCCCAAGGACAGACCCTCCATGAGGGATGTTATAATGATGCTTGGAGAGGCAAAGCCTCGGAGAAAGAGTGGTAGTAGGAGCAGTGAAACATTTGCAGCTAACAAGGAGATGCCAGTTATTAGCACATCACCAGTTAATGGCCTTCTGTAG 3051 0.4123 MQLKTQFLFYFYCICCFSYGFAAAAHDEASALLSLKEGLVDPLNSLHDWKLVDKAEEKNATHCNWTGVQCNSGGAVEKLDLSRMNLSGIVSNEIQRLKSLTSLNLCCNGFSSSLSSIANLSTLKSLDVSQNFFTGDFPLGLGKASGLTTLNASSNNFSGFLPEDLGNVSSLETLDLRGSFFEGSVPKSFSKLHKLKFLGLSGNNLTGEIPGELGQLSSLECMIIGYNEFKGGIPAEFRNLTKLKYLDLAEGNLGGEIPAELGMLKLLNTVFLYKNKFEGKIPPAIGNMTSLVQLDLSDNMLSGTIPAEISQLKNLQLLNFMRNRLSGPVPSGLGDLPQLEVLELWNNSLSGKLPSNLGKNSPLQWLDVSSNLLSGEIPETLCNKGYLTKLILFNNVFLGPIPASLSTCPSLVRVRIHNNFLSGTIPVGLGKLGKLQRLELANNSLTGGIPDDIGSSTSLSFIDFSRNNLHSSLPSTIISIPNLQTLIVSNNNLRGEIPDQFQDCPSLGVLDLSSNRFSGSIPASLASCQKLVSLNLQNNQLTGEIPKALASMPTLAILDLANNSLHGQIPESFGMSSALETFNVSHNKLEGPVPENGVLRTINLNDLAGNAGLCGGVLPPCGQTSAYILSHGSSRARHILVGWIIGISSILAIGVATLVARSLYTRWYTDGLCFGERFYKGKKGWPWRLMAFQRLDFTCSDILSCIKETNMLGMGATGVVYKAEIPQSSTIVAVKKLWRSGSDVEVGGSDDLVGEVNLLGRLRHRNIVRLLGFLYNDTDVMIVYEFMHNGNLGDALHGKQAGRLLVDWGSRYNIALGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMLRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKRPLDPEFGESIDIVGWIRRKIDNKSPEEALDPSVGNCKHVQEEMLLVLRIALLCTAKFPKDRPSMRDVIMMLGEAKPRRKSGSRSSETFAANKEMPVISTSPVNGLL 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00971 1016 Gene3D Phosphorylase Kinase; domain 1 706 790 - -
Cca02g00971 1016 PANTHER UNNAMED PRODUCT 2 996 - -
Cca02g00971 1016 Gene3D Transferase(Phosphotransferase) domain 1 791 1004 - -
Cca02g00971 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Cca02g00971 1016 Gene3D Ribonuclease Inhibitor 142 234 IPR032675 -
Cca02g00971 1016 Pfam Leucine rich repeat N-terminal domain 26 71 IPR013210 -
Cca02g00971 1016 ProSiteProfiles Protein kinase domain profile. 706 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00971 1016 SMART serkin_6 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00971 1016 Pfam Protein kinase domain 708 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00971 1016 Gene3D Ribonuclease Inhibitor 235 330 IPR032675 -
Cca02g00971 1016 SUPERFAMILY RNI-like 150 576 - -
Cca02g00971 1016 Gene3D Ribonuclease Inhibitor 331 627 IPR032675 -
Cca02g00971 1016 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Cca02g00971 1016 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Cca02g00971 1016 SUPERFAMILY L domain-like 353 449 - -
Cca02g00971 1016 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524
Cca02g00971 1016 SMART LRR_typ_2 288 312 IPR003591 -
Cca02g00971 1016 SMART LRR_typ_2 480 503 IPR003591 -
Cca02g00971 1016 SMART LRR_typ_2 192 216 IPR003591 -
Cca02g00971 1016 SMART LRR_typ_2 432 456 IPR003591 -
Cca02g00971 1016 SMART LRR_typ_2 336 360 IPR003591 -
Cca02g00971 1016 SMART LRR_typ_2 97 120 IPR003591 -
Cca02g00971 1016 SUPERFAMILY L domain-like 77 181 - -
Cca02g00971 1016 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
Cca02g00971 1016 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 996 - -
Cca02g00971 1016 SUPERFAMILY Protein kinase-like (PK-like) 698 981 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00971 Cca-Chr2 25930383 25934299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00971 7 1016 Receptor kinase-like Gene Family AT1G08590 60.174 0.0 1161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca02g00971 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00971 - - gmx:100788430 1867.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00971 02 25930383 25934299 Cca02g00971 02 25930383 25934299 ECH