Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00966 ATGGGTGTGTCAGGTTTTTTCCATGATATCCTGGGATTGCCCGTGTTGGAGCTCGCGACAATCTGCGTGAACCTGACTTTTGTTTTATTGTTTCTCTTTGTTGTCTCGGTGAGGCGTGTTCTTGTGTACGAGGGTGGATTTGGATTTGACAAGGATGGGAACACGGGCAATGCTATTGCTAGTCCAATTTGTAGTGTTGTAAGTGGAGAAGCGCGTGGTGTTAGAATCGGTGCTGTGTTCAAGTTGTCAGTGTTGTCTTGTTTCTATGTTTTGTTTGTGCATGTTTTGGCGTTGGGGTTTGATGGGGGTGGTTTGATTTTGGGTGCTGACGTGGATTTGTCTCTTCTTTCTGTGCCTGCTGTgctgggtttggcttggtttgtcttgagcttCTCGGCCTTGAATTGCAAGTTCAAGGTGTCAGAGAGGTTTCCATTTTTGTTAAGAGTGTGGTGgtttttgtcctttgttatttgcttgtgtactttgtttgttgATGGGAGAGGATTTTGGGAAGACGGTTCCAAGCATTTGTCTTCTCGTGCTGTTGCAAATGTTGCTGTCACACCAGCTCTTGCACTTTTGTGTGTAGTTGCAATTAGAGGTGGTACTGGTATAAGGGTATGTGGGAACTCTGATCTTCAAGAGCCATTGCTTGTTGAGGAGGAACCGGGGTGCCTAAAGGTTACTCCTTATAGAGATGCTGGACTTTTCAGCTTGGCTACACTTTCTTGGATGAATCCACTTCTTTCAATTGGTGCAAAGAGACCTCTTGAACTTAAGGACATTCCACTTGTTGCACCGAGAGATAGAGCCAAGAGTAGTTATAAGGTTTTGAATTCTAACTGGGAAAGATTGAAGGCTGAACATGACAATCCCTCTAAGCAGCCTTCGTTAGCTTGGGCGATTCTCATGTCATTCTGGAAGGAAGCGGCTCTGAATGCCATCTTTGCTGGTGTGAATACTTTGGTGTCATATGTAGGTCCATACATGGTAAGTTACTTTGTCGATTACTTGGGTGGCAAGGAGACTTTCCCACATGAGGGATATATCCTTGCTGGTATATTCTTTGTGGCAAAGCTTGTGGAGACTGTGACTACTAGGCAGTGGTATCTAGGAGTGGATATCTTGGGTATGCATGTTAGGTCAGCTCTAACTGCAATGGTGTATAGAAAGGGACTCAGACTCTCAAGCTCAGCCAAGCAAAGTCATACAAGTGGGGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTTCTCTTGGTACCTTCATGACATGTGGATGCTTCCTCTGCAGATTGCTCTTGCCCTTTTGATTTTGTATAAGAATGTTGGAATTGCGTCTGTTGCAACGTTGATTGCCACAATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGATACAAGAAGATTATCAAGACAAATTGATGGCGGCTAAGGATGAAAGGATGAGAAAGACATCAGAGAGTCTTAGGAGTATGAGGATTCTCAAGCTGCAAGCTTGGGAGGACAGATACCGATTGAAGTTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGTTAAGGAAAGCACTCTATTCTCAGGCTTTCATAACTTTCATATTTTGGAGCTCCCCTATATTTGTTTCAGCTGTTACTTTTGCTACTTCTATATTGTTGGGGGGTCAGCTGACTGCAGGCGGTGTTCTCTCTGCTCTAGCTACCTTTAGGATTCTCCAAGACCCTCTGAGAAATTTTCCTGACTTGGTATCAACCATGGCTCAGACAAAAGTTTCTCTTGATCGCATATCTGGTTTCCTGCAGGATGAAGAATTGCAGGAAGATGCGACTATTGTCTTGCCACATGGAATTTCTAACATGGCCATAGAAATTATGGATGGTGTCTTTTGCTGGGACTCGGCTTCACCTAGGCCTACTCTATCAGGAATACATATGAAAGTGGAAAAAGGGATGACTGTGGCTGTTTGCGGCATGGTTGGGTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTCGGAGAGATTCCTAAGCTGTCTGGTGAAGTAAGAGTGTGTGGTTCTGTTGCATATGTTTCCCAATCTGCTTGGATACAGTCAGGAAATATAGAAGAAAATATCTTGTTTGGCACCCCAATGGACAAAGCAAAGTACAAAAATGTACTTCATGCTTGTTCACTGAAAAAGGATCTCGAACTTCTCTCACATGGAGACCAAACGATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTTGCAAGAGCACTTTACCAAGGCACTGATATTTACCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTATTCAGGGAGTATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACTCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATACTGGTTCTCAAGGAAGGCCACATAATACAGGCTGGAAAATATGATGATCTTCTACAAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCACTCTGAAGATTCAGATGAAAATGTACCCTTGGATGCAGTTGTTATGACCAGTAAGACATCCATTTCTTCTGCAAATGATATTGACTGTTTGGCCAAGGAAGTTCAAGAGGGATCATCAGATCAGaaagcaattaaggaaaagaagaaagcaaaacgctcaagaaaaaagcaGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCTGCAGCATATAAAGGTTTATTGATTCCACTCATAATCCTTGCACAAACACTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGAGGGAGATCAACCAAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCGTGGTTCATATTTGTAAGGGCTGTTCTTGTGGCTACATTTGGTCTAGCAGCTGCACAAAAACTATTTTTCAATATGCTTAGAAGCATTTTCCGTGCACCAATGTCTTTCTTTGACACTACACCAGCTGGAAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGACATACCTTTTAGACTTGGAGGGTTTGCTTCATCAACTATACAGCTTATTGGCATTGTTGCTGTAATGACAGATGTTACATGGCAAGTTCTGTTCCTAGTAGTCCCAATGGCCATTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAATTGGTTCGTATTGTGAGTATCCAGAAATCCCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATTAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTCTATAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTATTTGCTTTCTGCCTGGTATTACTTGTTAGCCTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCTGTAACATATGGCCTGAATTTAAATGGACGTCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCCATCGAAAGAATTTATCAGTACAGCCAAATTCCTAGCGAAGCACCAACAATTATTGAAGATTCTCGCCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGGTACGTTACAAAGAAAATCTTCCTGTGGTGCTTCATGGAATATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGTCGTACTGGCAGTGGCAAATCTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGAAGCTGGGAGTATCCTTATAGACAACATTAATATTTCAGCAATTGGCCTTCATGACCTTAGAAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAAGCAATCTTGATCCCCTTGAAGAGCACTCTGATCAGGAGATTTGGGAGGCCTTAGATAAGTCTCAACTTGGAGATATCATCCGTGAGTCAGAGCGCAAACTTGATATGCCAGTGTTGGAAAATGGAGATAATTGGAGTGTAGGACAGTGGCAACTAGTTTCTTTGGGTCGAGCTCTGTTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACTGCATCAGTTGATACTGCCACTGATAATCTTATACAGAAGATTATTCGAAGAGAGTTTAATGACTGCACTGTGTGCACTATTGCACATCGTATTCCTACAGTTATTGACAGTGATCTAGTGCTGGTTCTCAGTGATGGTCAAGTTGCAGAGTTTGACACTCCATCAAGGCTGTTAGAAGACAAGTCATCTATGTTCCTGAAGTTGGTGAGTGAGTATTCATCGCGGTCAAGTGGCATACCAGACTTTTAA 4545 0.4158 MGVSGFFHDILGLPVLELATICVNLTFVLLFLFVVSVRRVLVYEGGFGFDKDGNTGNAIASPICSVVSGEARGVRIGAVFKLSVLSCFYVLFVHVLALGFDGGGLILGADVDLSLLSVPAVLGLAWFVLSFSALNCKFKVSERFPFLLRVWWFLSFVICLCTLFVDGRGFWEDGSKHLSSRAVANVAVTPALALLCVVAIRGGTGIRVCGNSDLQEPLLVEEEPGCLKVTPYRDAGLFSLATLSWMNPLLSIGAKRPLELKDIPLVAPRDRAKSSYKVLNSNWERLKAEHDNPSKQPSLAWAILMSFWKEAALNAIFAGVNTLVSYVGPYMVSYFVDYLGGKETFPHEGYILAGIFFVAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFSWYLHDMWMLPLQIALALLILYKNVGIASVATLIATIISIVVTVPVARIQEDYQDKLMAAKDERMRKTSESLRSMRILKLQAWEDRYRLKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQDPLRNFPDLVSTMAQTKVSLDRISGFLQDEELQEDATIVLPHGISNMAIEIMDGVFCWDSASPRPTLSGIHMKVEKGMTVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSVAYVSQSAWIQSGNIEENILFGTPMDKAKYKNVLHACSLKKDLELLSHGDQTIIGDRGINLSGGQKQRIQLARALYQGTDIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVPLDAVVMTSKTSISSANDIDCLAKEVQEGSSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIILAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFRAPMSFFDTTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQVLFLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFYSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSRPPSSWPENGTIQLIDLKVRYKENLPVVLHGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSILIDNINISAIGLHDLRSHLSIIPQDPTLFEGTIRSNLDPLEEHSDQEIWEALDKSQLGDIIRESERKLDMPVLENGDNWSVGQWQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFNDCTVCTIAHRIPTVIDSDLVLVLSDGQVAEFDTPSRLLEDKSSMFLKLVSEYSSRSSGIPDF 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00966 1514 SUPERFAMILY ABC transporter transmembrane region 301 608 IPR036640 GO:0005524|GO:0016021
Cca02g00966 1514 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Cca02g00966 1514 CDD ABC_6TM_ABCC_D2 949 1243 IPR044726 GO:0140359
Cca02g00966 1514 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Cca02g00966 1514 Pfam ABC transporter 1285 1433 IPR003439 GO:0005524
Cca02g00966 1514 Gene3D ABC transporter type 1, transmembrane domain 280 609 IPR036640 GO:0005524|GO:0016021
Cca02g00966 1514 Gene3D ABC transporter type 1, transmembrane domain 910 1249 IPR036640 GO:0005524|GO:0016021
Cca02g00966 1514 Coils Coil 906 926 - -
Cca02g00966 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1268 1502 IPR003439 GO:0005524
Cca02g00966 1514 Gene3D - 1251 1503 IPR027417 -
Cca02g00966 1514 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524
Cca02g00966 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1221 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g00966 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 66 1514 - -
Cca02g00966 1514 CDD ABCC_MRP_domain2 1266 1486 - -
Cca02g00966 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 848 IPR027417 -
Cca02g00966 1514 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 66 1514 - -
Cca02g00966 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1498 IPR027417 -
Cca02g00966 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 849 IPR003439 GO:0005524
Cca02g00966 1514 CDD ABCC_MRP_domain1 626 825 - -
Cca02g00966 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g00966 1514 Pfam ABC transporter transmembrane region 951 1195 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g00966 1514 Pfam ABC transporter transmembrane region 315 580 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca02g00966 1514 SUPERFAMILY ABC transporter transmembrane region 948 1248 IPR036640 GO:0005524|GO:0016021
Cca02g00966 1514 Gene3D - 620 854 IPR027417 -
Cca02g00966 1514 SMART AAA_5 653 834 IPR003593 -
Cca02g00966 1514 SMART AAA_5 1294 1487 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00966 Cca-Chr2 25847775 25856969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00966 647 842 Calmodulin-binding Proteins AT2G36910 32.075 4.87e-20 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00966 - - gmx:100781010 2763.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00966 02 25847775 25856969 Cca02g00966 02 25847775 25856969 ECH
Cca03g02254 03 43388862 43397990 Cca02g00966 02 25847775 25856969 PCT