Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g00966 | ATGGGTGTGTCAGGTTTTTTCCATGATATCCTGGGATTGCCCGTGTTGGAGCTCGCGACAATCTGCGTGAACCTGACTTTTGTTTTATTGTTTCTCTTTGTTGTCTCGGTGAGGCGTGTTCTTGTGTACGAGGGTGGATTTGGATTTGACAAGGATGGGAACACGGGCAATGCTATTGCTAGTCCAATTTGTAGTGTTGTAAGTGGAGAAGCGCGTGGTGTTAGAATCGGTGCTGTGTTCAAGTTGTCAGTGTTGTCTTGTTTCTATGTTTTGTTTGTGCATGTTTTGGCGTTGGGGTTTGATGGGGGTGGTTTGATTTTGGGTGCTGACGTGGATTTGTCTCTTCTTTCTGTGCCTGCTGTgctgggtttggcttggtttgtcttgagcttCTCGGCCTTGAATTGCAAGTTCAAGGTGTCAGAGAGGTTTCCATTTTTGTTAAGAGTGTGGTGgtttttgtcctttgttatttgcttgtgtactttgtttgttgATGGGAGAGGATTTTGGGAAGACGGTTCCAAGCATTTGTCTTCTCGTGCTGTTGCAAATGTTGCTGTCACACCAGCTCTTGCACTTTTGTGTGTAGTTGCAATTAGAGGTGGTACTGGTATAAGGGTATGTGGGAACTCTGATCTTCAAGAGCCATTGCTTGTTGAGGAGGAACCGGGGTGCCTAAAGGTTACTCCTTATAGAGATGCTGGACTTTTCAGCTTGGCTACACTTTCTTGGATGAATCCACTTCTTTCAATTGGTGCAAAGAGACCTCTTGAACTTAAGGACATTCCACTTGTTGCACCGAGAGATAGAGCCAAGAGTAGTTATAAGGTTTTGAATTCTAACTGGGAAAGATTGAAGGCTGAACATGACAATCCCTCTAAGCAGCCTTCGTTAGCTTGGGCGATTCTCATGTCATTCTGGAAGGAAGCGGCTCTGAATGCCATCTTTGCTGGTGTGAATACTTTGGTGTCATATGTAGGTCCATACATGGTAAGTTACTTTGTCGATTACTTGGGTGGCAAGGAGACTTTCCCACATGAGGGATATATCCTTGCTGGTATATTCTTTGTGGCAAAGCTTGTGGAGACTGTGACTACTAGGCAGTGGTATCTAGGAGTGGATATCTTGGGTATGCATGTTAGGTCAGCTCTAACTGCAATGGTGTATAGAAAGGGACTCAGACTCTCAAGCTCAGCCAAGCAAAGTCATACAAGTGGGGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTTCTCTTGGTACCTTCATGACATGTGGATGCTTCCTCTGCAGATTGCTCTTGCCCTTTTGATTTTGTATAAGAATGTTGGAATTGCGTCTGTTGCAACGTTGATTGCCACAATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGATACAAGAAGATTATCAAGACAAATTGATGGCGGCTAAGGATGAAAGGATGAGAAAGACATCAGAGAGTCTTAGGAGTATGAGGATTCTCAAGCTGCAAGCTTGGGAGGACAGATACCGATTGAAGTTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGTTAAGGAAAGCACTCTATTCTCAGGCTTTCATAACTTTCATATTTTGGAGCTCCCCTATATTTGTTTCAGCTGTTACTTTTGCTACTTCTATATTGTTGGGGGGTCAGCTGACTGCAGGCGGTGTTCTCTCTGCTCTAGCTACCTTTAGGATTCTCCAAGACCCTCTGAGAAATTTTCCTGACTTGGTATCAACCATGGCTCAGACAAAAGTTTCTCTTGATCGCATATCTGGTTTCCTGCAGGATGAAGAATTGCAGGAAGATGCGACTATTGTCTTGCCACATGGAATTTCTAACATGGCCATAGAAATTATGGATGGTGTCTTTTGCTGGGACTCGGCTTCACCTAGGCCTACTCTATCAGGAATACATATGAAAGTGGAAAAAGGGATGACTGTGGCTGTTTGCGGCATGGTTGGGTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTCGGAGAGATTCCTAAGCTGTCTGGTGAAGTAAGAGTGTGTGGTTCTGTTGCATATGTTTCCCAATCTGCTTGGATACAGTCAGGAAATATAGAAGAAAATATCTTGTTTGGCACCCCAATGGACAAAGCAAAGTACAAAAATGTACTTCATGCTTGTTCACTGAAAAAGGATCTCGAACTTCTCTCACATGGAGACCAAACGATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTTGCAAGAGCACTTTACCAAGGCACTGATATTTACCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTATTCAGGGAGTATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACTCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATACTGGTTCTCAAGGAAGGCCACATAATACAGGCTGGAAAATATGATGATCTTCTACAAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCACTCTGAAGATTCAGATGAAAATGTACCCTTGGATGCAGTTGTTATGACCAGTAAGACATCCATTTCTTCTGCAAATGATATTGACTGTTTGGCCAAGGAAGTTCAAGAGGGATCATCAGATCAGaaagcaattaaggaaaagaagaaagcaaaacgctcaagaaaaaagcaGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCTGCAGCATATAAAGGTTTATTGATTCCACTCATAATCCTTGCACAAACACTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGAGGGAGATCAACCAAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCGTGGTTCATATTTGTAAGGGCTGTTCTTGTGGCTACATTTGGTCTAGCAGCTGCACAAAAACTATTTTTCAATATGCTTAGAAGCATTTTCCGTGCACCAATGTCTTTCTTTGACACTACACCAGCTGGAAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGACATACCTTTTAGACTTGGAGGGTTTGCTTCATCAACTATACAGCTTATTGGCATTGTTGCTGTAATGACAGATGTTACATGGCAAGTTCTGTTCCTAGTAGTCCCAATGGCCATTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAATTGGTTCGTATTGTGAGTATCCAGAAATCCCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATTAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTCTATAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTATTTGCTTTCTGCCTGGTATTACTTGTTAGCCTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCTGTAACATATGGCCTGAATTTAAATGGACGTCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCCATCGAAAGAATTTATCAGTACAGCCAAATTCCTAGCGAAGCACCAACAATTATTGAAGATTCTCGCCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGGTACGTTACAAAGAAAATCTTCCTGTGGTGCTTCATGGAATATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGTCGTACTGGCAGTGGCAAATCTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGAAGCTGGGAGTATCCTTATAGACAACATTAATATTTCAGCAATTGGCCTTCATGACCTTAGAAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAAGCAATCTTGATCCCCTTGAAGAGCACTCTGATCAGGAGATTTGGGAGGCCTTAGATAAGTCTCAACTTGGAGATATCATCCGTGAGTCAGAGCGCAAACTTGATATGCCAGTGTTGGAAAATGGAGATAATTGGAGTGTAGGACAGTGGCAACTAGTTTCTTTGGGTCGAGCTCTGTTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACTGCATCAGTTGATACTGCCACTGATAATCTTATACAGAAGATTATTCGAAGAGAGTTTAATGACTGCACTGTGTGCACTATTGCACATCGTATTCCTACAGTTATTGACAGTGATCTAGTGCTGGTTCTCAGTGATGGTCAAGTTGCAGAGTTTGACACTCCATCAAGGCTGTTAGAAGACAAGTCATCTATGTTCCTGAAGTTGGTGAGTGAGTATTCATCGCGGTCAAGTGGCATACCAGACTTTTAA | 4545 | 0.4158 | MGVSGFFHDILGLPVLELATICVNLTFVLLFLFVVSVRRVLVYEGGFGFDKDGNTGNAIASPICSVVSGEARGVRIGAVFKLSVLSCFYVLFVHVLALGFDGGGLILGADVDLSLLSVPAVLGLAWFVLSFSALNCKFKVSERFPFLLRVWWFLSFVICLCTLFVDGRGFWEDGSKHLSSRAVANVAVTPALALLCVVAIRGGTGIRVCGNSDLQEPLLVEEEPGCLKVTPYRDAGLFSLATLSWMNPLLSIGAKRPLELKDIPLVAPRDRAKSSYKVLNSNWERLKAEHDNPSKQPSLAWAILMSFWKEAALNAIFAGVNTLVSYVGPYMVSYFVDYLGGKETFPHEGYILAGIFFVAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFSWYLHDMWMLPLQIALALLILYKNVGIASVATLIATIISIVVTVPVARIQEDYQDKLMAAKDERMRKTSESLRSMRILKLQAWEDRYRLKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQDPLRNFPDLVSTMAQTKVSLDRISGFLQDEELQEDATIVLPHGISNMAIEIMDGVFCWDSASPRPTLSGIHMKVEKGMTVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSVAYVSQSAWIQSGNIEENILFGTPMDKAKYKNVLHACSLKKDLELLSHGDQTIIGDRGINLSGGQKQRIQLARALYQGTDIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVPLDAVVMTSKTSISSANDIDCLAKEVQEGSSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIILAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFRAPMSFFDTTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQVLFLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFYSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSRPPSSWPENGTIQLIDLKVRYKENLPVVLHGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSILIDNINISAIGLHDLRSHLSIIPQDPTLFEGTIRSNLDPLEEHSDQEIWEALDKSQLGDIIRESERKLDMPVLENGDNWSVGQWQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFNDCTVCTIAHRIPTVIDSDLVLVLSDGQVAEFDTPSRLLEDKSSMFLKLVSEYSSRSSGIPDF | 1514 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g00966 | 1514 | SUPERFAMILY | ABC transporter transmembrane region | 301 | 608 | IPR036640 | GO:0005524|GO:0016021 | |
Cca02g00966 | 1514 | CDD | ABC_6TM_ABCC_D1 | 313 | 600 | IPR044746 | GO:0140359 | |
Cca02g00966 | 1514 | CDD | ABC_6TM_ABCC_D2 | 949 | 1243 | IPR044726 | GO:0140359 | |
Cca02g00966 | 1514 | Pfam | ABC transporter | 644 | 778 | IPR003439 | GO:0005524 | |
Cca02g00966 | 1514 | Pfam | ABC transporter | 1285 | 1433 | IPR003439 | GO:0005524 | |
Cca02g00966 | 1514 | Gene3D | ABC transporter type 1, transmembrane domain | 280 | 609 | IPR036640 | GO:0005524|GO:0016021 | |
Cca02g00966 | 1514 | Gene3D | ABC transporter type 1, transmembrane domain | 910 | 1249 | IPR036640 | GO:0005524|GO:0016021 | |
Cca02g00966 | 1514 | Coils | Coil | 906 | 926 | - | - | |
Cca02g00966 | 1514 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1268 | 1502 | IPR003439 | GO:0005524 | |
Cca02g00966 | 1514 | Gene3D | - | 1251 | 1503 | IPR027417 | - | |
Cca02g00966 | 1514 | ProSitePatterns | ABC transporters family signature. | 751 | 765 | IPR017871 | GO:0005524 | |
Cca02g00966 | 1514 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 951 | 1221 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca02g00966 | 1514 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 66 | 1514 | - | - | |
Cca02g00966 | 1514 | CDD | ABCC_MRP_domain2 | 1266 | 1486 | - | - | |
Cca02g00966 | 1514 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 623 | 848 | IPR027417 | - | |
Cca02g00966 | 1514 | PANTHER | MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN | 66 | 1514 | - | - | |
Cca02g00966 | 1514 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1259 | 1498 | IPR027417 | - | |
Cca02g00966 | 1514 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 626 | 849 | IPR003439 | GO:0005524 | |
Cca02g00966 | 1514 | CDD | ABCC_MRP_domain1 | 626 | 825 | - | - | |
Cca02g00966 | 1514 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 312 | 592 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca02g00966 | 1514 | Pfam | ABC transporter transmembrane region | 951 | 1195 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca02g00966 | 1514 | Pfam | ABC transporter transmembrane region | 315 | 580 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cca02g00966 | 1514 | SUPERFAMILY | ABC transporter transmembrane region | 948 | 1248 | IPR036640 | GO:0005524|GO:0016021 | |
Cca02g00966 | 1514 | Gene3D | - | 620 | 854 | IPR027417 | - | |
Cca02g00966 | 1514 | SMART | AAA_5 | 653 | 834 | IPR003593 | - | |
Cca02g00966 | 1514 | SMART | AAA_5 | 1294 | 1487 | IPR003593 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g00966 | Cca-Chr2 | 25847775 | 25856969 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g00966 | 647 | 842 | Calmodulin-binding Proteins | AT2G36910 | 32.075 | 4.87e-20 | 95.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g00966 | - | - | gmx:100781010 | 2763.41 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca02g00966 | 02 | 25847775 | 25856969 | Cca02g00966 | 02 | 25847775 | 25856969 | ECH | |
Cca03g02254 | 03 | 43388862 | 43397990 | Cca02g00966 | 02 | 25847775 | 25856969 | PCT |