Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00962 ATGGCGCTATGGATGGAAAAGGGTTCGGAGCCCTTAACCGAAAGCGAGAAGGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTGCAGCCTTTGAATTCAAGGAAAAGGGCAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAAGGCAATTAATCAGAAAGCCTTGAGTGATTCTGAGACCTCTATTCTTTTTTCAAATAGAGCCCATGTGAATTTGCTTCTAGGAAATCTTAGACGTGCTCTCACAGATGCTCAGGAGGCCCTCAAGTTGTGCCCCTCAAATTTAAAGGCAATTTATAGAGCTGCCAAAGCTTCTCTTTCACTAAATATGTTGGTTGAAGCTAGAGAGTATTGTCTGAAGGGTCTTCAGTTGGACTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGAACAACAGATTGGAATTAAGATATCAGAAAAGGAAAAGCATGAGGCTGAGGTCTCCAAGGCTGTTGCAGAGGCAAAAGAACTTGTGTCTGCGATAGAATATAGAGGCTTGAAGATTGGAAAGGCAGTGTACCGAGAACTTACTGGATTACGGAAACCTGTGTTGGATAAAAGTAATATTCTTCACTGGCCTGTAATTCTTCTGTACGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTCGGTTCACCTTGATATGATATTTGCAGAAGATCAGCCTTTGTCATGGGATGTTGAAAACAACTACAAACGTGAATTTGTAGAATTATACTATGAGGCTTGTTCTGGGATTTGTCTATCAAAGGAAAAACTTCTTCATTGTCTGTTAGAGGGAACTGCAGCTTCTGACAGGGAAGGTGTTGGTGATGAAGAGAAAGATGTAGTTGAGGATTTTAAGCAACATGGCGGCTCCCCTAAATGGATCAAAGTGAATGAAAGGAGAACACTTCATGACGTTCTTAAAGAGCCTAATTTCATCATTCCTGGAATCCCAGTTTTCTATGTTGTTTCAAAGCGATCCAGCTTTTACAGCAAGTTCAAAGCTGGAAAGTGGGCTCCTCCAGTTATGTGA 1089 0.4169 MALWMEKGSEPLTESEKADLEAIAAIKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTKAINQKALSDSETSILFSNRAHVNLLLGNLRRALTDAQEALKLCPSNLKAIYRAAKASLSLNMLVEAREYCLKGLQLDLDPNNEELKKLEQQIGIKISEKEKHEAEVSKAVAEAKELVSAIEYRGLKIGKAVYRELTGLRKPVLDKSNILHWPVILLYAEVMSSDFIEDFCETDMFSVHLDMIFAEDQPLSWDVENNYKREFVELYYEACSGICLSKEKLLHCLLEGTAASDREGVGDEEKDVVEDFKQHGGSPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKRSSFYSKFKAGKWAPPVM 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00962 362 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 358 - -
Cca02g00962 362 Coils Coil 129 177 - -
Cca02g00962 362 SUPERFAMILY TPR-like 22 160 IPR011990 GO:0005515
Cca02g00962 362 SMART tpr_5 71 104 IPR019734 GO:0005515
Cca02g00962 362 SMART tpr_5 105 138 IPR019734 GO:0005515
Cca02g00962 362 SMART tpr_5 31 66 IPR019734 GO:0005515
Cca02g00962 362 Pfam Cns1/TTC4 Wheel domain 203 268 IPR044059 GO:0051879
Cca02g00962 362 Gene3D Tetratricopeptide repeat domain 26 157 IPR011990 GO:0005515
Cca02g00962 362 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 358 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00962 30 162 Calmodulin-binding Proteins AT3G25230 33.333 8.42e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00962 K24927 - gmx:100783179 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00962 02 25766196 25771328 Cca02g00962 02 25766196 25771328 ECH