Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00961 ATGGCTACTCAAGGACAAGTCATTACGTGCAAAGCCGCGGTGGCCTGGGAACCCAACAAGCCATTGACCATCGAGGACGTTCAGGTGGCTCCGCCGCAGAACGGCGAGGTCCGTGTCCAAATTCTCTACACTGCTCTCTGTCACACCGATGCTTACACTTGGAGCGGCAAGGATCCAGAAGGTCTTTTCCCATGTATACTTGGTCATGAGGCTGCAGGGGTTGTGGAAAGTGTTGGAGAAGGTGTTACTGAAATTCAGCCTGGTGATCATGTCATCCCTTGTTACCAGGCTGAATGTGGAGAGTGCAAGTTTTGCAAATCAGGCAAAACCAATCTGTGTGGCAAAGTTCGATCTGCCACTGGGGTAGGGGTCATGCTGAGCGATCACAAGAGTCGTTTCTCTATTAATGGAAAACCACTCTATCATTTTATGGGAACCTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATCGATCCCAAAGCTCCATTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACCGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAAGCGGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTGGCTGTTGCAGAGGGTGCAAGAGCTGTTGGTGCATCACGAATTATTGGCATAGATATTGACAGCAATAAGTTTGAAAGAGCAAAGAACTTTGGAGTCACCGAGTTTATTAATCCAAAAGAACATGAGAAACCAATTCAGCAGGTCATAGTTGATCTCACAGATGGTGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCAGTGATGAGGGCTGCTTTGGAATGCTGCCATAAGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCTACTCGACCTTTCCAATTGGTGACTGGTCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCCGGTCACAAGTTCCTTGGCTTGTAGACAAATACATGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCACAATTTGAGTCTTGCGGAGATCAATAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTGCAATGCAGAAGTGA 1140 0.4684 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQNGEVRVQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGVVESVGEGVTEIQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDHKSRFSINGKPLYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGARAVGASRIIGIDIDSNKFERAKNFGVTEFINPKEHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNLSLAEINKAFDLMHEGGCLRCVLAMQK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00961 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
Cca02g00961 379 Pfam Zinc-binding dehydrogenase 206 329 IPR013149 -
Cca02g00961 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cca02g00961 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Cca02g00961 379 Gene3D - 182 320 - -
Cca02g00961 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Cca02g00961 379 PANTHER ALCOHOL DEHYDROGENASE 3 377 - -
Cca02g00961 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Cca02g00961 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Cca02g00961 379 Gene3D - 13 372 - -
Cca02g00961 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Cca02g00961 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00961 Cca-Chr2 25759948 25764167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00961 10 331 Monolignol Biosynthesis Gene Families AT1G72680 25.610 2.32e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00961 K00121 - gmx:100793008 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00961 02 25759948 25764167 Cca02g00961 02 25759948 25764167 ECH
Cca03g02264 03 43521169 43525626 Cca02g00961 02 25759948 25764167 PCT