Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00957 ATGTCGACGTCGCGTTCCTTCCTCCTGTCTCTCCTTCATCTGCTCCTTTTCTCAGTGAACTTGGTTTATATGAATGTGCCATTTTCTTCATCTGAACAAGCTAAAATGTGGTTATTTAAACCTTCTTCTGGACCATCTATTGCTCCTGGGCAATCTCCATGTTATCAAGGTCCTCAAGTGACTCCAAGATCAGAACTtcatcatcatcaccatcatcaccatAGCATGGAACCTTATGTTGTGGCTCCATCCCCTTCTAAAGGCCAAGCTTGTTACCAAACCTGTACAGATCCATTAACTGCAACTCCTTTTGGTACACCTTGTGGTTGTGTGTTTCCCATGAAAGTCAGACTAGTACTGGATGTGGCTCCTTTGGCTGTTTTTCCAGTAATTAATGAGTTAGAGATCGAAGTTGCATCTGGAACATATTTGAAGCAGAGCCAGGTGAGGATAGTGGGTGTCAGTGCTGACGGTCAAAATCAGGGAAGAACCAAAGTTGATATTAACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCAGTTCTGTTGTATCAGAAGTTTTGGCACAAGGAAGTTCCTATAAATAGGAGCCTTTTTGGTGATTATGCAATCTTGTACATTGCTTATCCAGGGATACCATCATCATTGCCACCTGGAACCTTAGGGAGCGGTCCCCAGCCCAATGATGTTCTCCCAGTCACTGTCGACTTTATCAACAAGAATGCGAAAATGGATCTTAGAACCATAGTTGCTCTATCTTCCATTATACTCTTGTTGGTTTTGGTCGGAGCATTTTCCATCCTTTTGAAATGGATGAAAGTTAGGAGACCATCACATGCTATTGGCCCTGCATTCACATCGCATCTAAACAAGAGATCTGCCATGGAGTCCATGTTGTCAAGAAGAATTACGAGCTCAAGATCTATGTCCTTTGTGTCCACCATCGCTACTTCTATTCTCTCTGTTAAAACATTTTCCTTTTCCGAGCTTGAGAAAGCAACAGCTAAGTTCAGTTCTCATAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTGTGGGATATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAGGGATGATCGGAATGGAGACCGTGAATTTGTCTCCGAAGTTGAGATGCTAAGTCGTTTGCATCATCGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCGAAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGTAGTGTGGAGTCTCATTTGCATGGTGATGTTAACAAGAAAAGCAGCCCTCTAGATTGGGAAGCACGGAAAAAAATTGCCCTTGGAGCTGCAAGAGGACTGGCCTATCTACATGAGGATTCTAATCCTCGTGTAATTCACCGAGACTTCAAAGCTAGTAACGTGTTGTTAGAAGATGACTTTACCCCCAAGGTTTCTGATTTTGGATTGGCAAGAGAAGCAACCGAAGGAAGTCGTCATATTTCTACTAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACCGGCCATTTACTAGTTAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTATCTGGCAGAAAACCAGTGGACATGTCTCAACCTTCTGGACAGGAGAATCTTGTAACGTGGGCTCGGCCACTGTTGGCAAGTAGAGAAGGTTTAGAACAGCTGGTGGATCCATCTCTGGCTGGAAGCTATGACTTTGATGACATGGCAAAGGTGGCTGCTATTGCTTCCATGTGTGTAAATCCGGAGGTGTCTAAGAGACCTTTTATGGGTGAGGTTGTGCAGGCTCTTAAGCTGATCTACAATGACATCAATGAGAGTCAGAAGGAGTCTTATGGTGAGGAGTCGGATTTTGGAGGTGACCTTGTCTTTTCTGATAGCAGTTTGGTGGATGGTGAAGAATCTAACTGCATCACAATGGAATACAGTTCTGGTTCACTTGCAATGGAAAAGAGAGCGTTGAAAGGAAATGAGATAGCTTTACTAATGAAGCACGGACACAGATCAGGCCCCTTGGGAACAAGATCTGCCCGGAGCAAGCTATCCTTCTCTAAGCTAACTCGAAGTCGGAGTGAGCATGCATGCGGTACGTCCTTCCAATCGTGTTTGGAATGA 2160 0.4324 MSTSRSFLLSLLHLLLFSVNLVYMNVPFSSSEQAKMWLFKPSSGPSIAPGQSPCYQGPQVTPRSELHHHHHHHHSMEPYVVAPSPSKGQACYQTCTDPLTATPFGTPCGCVFPMKVRLVLDVAPLAVFPVINELEIEVASGTYLKQSQVRIVGVSADGQNQGRTKVDINLVPLGEKFDNTTAVLLYQKFWHKEVPINRSLFGDYAILYIAYPGIPSSLPPGTLGSGPQPNDVLPVTVDFINKNAKMDLRTIVALSSIILLLVLVGAFSILLKWMKVRRPSHAIGPAFTSHLNKRSAMESMLSRRITSSRSMSFVSTIATSILSVKTFSFSELEKATAKFSSHRVLGEGGFGRVYCGILDDGNEVAVKLLTRDDRNGDREFVSEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDVNKKSSPLDWEARKKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPSGQENLVTWARPLLASREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVNPEVSKRPFMGEVVQALKLIYNDINESQKESYGEESDFGGDLVFSDSSLVDGEESNCITMEYSSGSLAMEKRALKGNEIALLMKHGHRSGPLGTRSARSKLSFSKLTRSRSEHACGTSFQSCLE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00957 719 Pfam Protein kinase domain 340 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00957 719 Gene3D Phosphorylase Kinase; domain 1 312 414 - -
Cca02g00957 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Cca02g00957 719 SUPERFAMILY Protein kinase-like (PK-like) 317 615 IPR011009 -
Cca02g00957 719 PANTHER OS01G0750732 PROTEIN 8 709 - -
Cca02g00957 719 Gene3D Transferase(Phosphotransferase) domain 1 415 635 - -
Cca02g00957 719 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Cca02g00957 719 ProSiteProfiles Protein kinase domain profile. 339 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00957 719 MobiDBLite consensus disorder prediction 49 79 - -
Cca02g00957 719 CDD STKc_IRAK 345 615 - -
Cca02g00957 719 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 8 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00957 Cca-Chr2 25716800 25724235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00957 91 624 Receptor kinase-like Gene Family AT5G56890 57.473 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Cca02g00957 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00957 - - gmx:100790546 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00957 02 25716800 25724235 Cca02g00957 02 25716800 25724235 ECH