Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00954 ATGAACTGTGTAGGTCGTAAGGCTGAGCTGTATCCCACCACAACCCAAGGCCTACTGCGATCAATTAGATTTAGAGGATCGGGAGTTAGGGTTTCTTTCGCACCGCTGCGTCAGAGTCTTGcgccaccacgctcgcaaccgccaccgccaccgccaccggccaAAGAATTCACAACCCCAGGTTTGTGTCGAGCTATTATCTGTAATAATATTAATCTCATGGATGAGAAAGCCAAGAAAAAGGGGGGAAAAGATGTTGAAGTAATGAATAGTAATATTCCTGATGGTAAGGAAGTGCAGTTCTTGGATGACAACCaagaaagaaagatgaagaaaagaaaaaaaTATGATTCTTCATTAGATGGAATGCAAGAATCGGACTTTTCAAAACCAAGCAAAAAAATGAGAAAGGTTAATGGGTTAAAAAACAATAAAGGTGAAGATGATGACCAACACAAGCAGATAAAGAAATCAGGTGGTGAAAGCCAACACAAGGATTACAATGAAGATAAAGATGGCAGCCACTACGAGAAGAAGAAAAAGAAATCAAGTAAGGAAAGCAAAAGTCAGGTGTATAATGAGTTTGAAAGCAAAGAAGGTGGAGATGATGATCAAGGTAAGCATATCAAGAAGATAAAGAAATCAGGTGATGAAAGCCAACACAAGGATTACAATGAAGATAAAAATGACAGCCATTACaaaaagaagaagaaaaagacatcgagtaaagaaagcaaaagTCAGGCGTATGGTGAGTTTGAAAGCAAAGAAGGTGATCAACCTTCAGCTAGAGTCAAGTCAATTGTCACTGAAGTTGAGGACCAAAGCAAGACAGAGACAAAGAAGAAAGCTAAGGCAGATACCAGCGAATCTCCTAACCCTGGTCACTCTGGATCATCCAAACCCAAAAGAGCAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGTCAGGCATGTAATGAGTTTGAAAGAAATGAAGGTGGAGATGGTGATCAAGGTAAGAAGATGAAGAAGAAGAAGCTGCATGACAAAAGCAAAAATAAGGAGAATAGTGAGTTAAATAGCAATGAAGGTGATCAACCTTCAGCTAGAGTCAAGTCAATTGTCACTGAAGTTGATGACCAAAGCAAGACAGAGACAAAGAAGAAAGCTAAGGCAGATACCAGTGAATCTCCTAACCCTGGTCACTCTGGATCATCCAAACCCAAACGAGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTTTACACCTGAAGAAGATAAGAGGATTGAATTGGCTGTTTTTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCAATTGCATACATTATCCTGCAGTTAGAGATTGTTGGAAGGAAATTGGGTTAGCCTTACCTGAGAGGCCTCAACTTAGCGTGTATAATCGAGCTCATGTTTTGTTTGAAAGAAGTGAGAAGCGTGGGTGGACACCTGAGGAGTTAGAATTTTTACGGAAGATGAAGGAACAACATGGATCCGATTGGAAATCAGTAGCTGTAGCATTGGGAAAACATCGATTTCATGTGAAGGATGCATGGCGTAGAATAAAATCAGCCGATGCAAACAAAGGACGATGGATCCAAGAGGAGTATCAAAAATTATTTGATTTAGTAAACGTGGATCTACGTGGGAGAGCTTCACAGGTTCATAGAAAAACAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGGTGACAAATTCACTAGAAGCAGTTCAAGTTGCTGCGAAAAGTGGTATAACAAATTAACATCACCTATGGTTGCTCATGGTGTATGGAGTGATACTGATGACTATCGCCTCGTAAATGCTTTATTTACTTTGGATGCTTGCTGCATGGAGGAGGTAGATTGGGACAATCTGATTGAGAATAGGTCTGGTGATGTTTGTAGAAAACGTTGGAACCAAATGGTTCAATGCATTGGAGAGCATGGTGGGAAGTCATTTGCTGAGCAGATTGAAATTCTTGCAAAAAGATTTTGCCCCGATTTATTGGAAGTAAGAGAGGCCTTTGATGCAATACCTGTGAGTTGTTGA 2130 0.3817 MNCVGRKAELYPTTTQGLLRSIRFRGSGVRVSFAPLRQSLAPPRSQPPPPPPPAKEFTTPGLCRAIICNNINLMDEKAKKKGGKDVEVMNSNIPDGKEVQFLDDNQERKMKKRKKYDSSLDGMQESDFSKPSKKMRKVNGLKNNKGEDDDQHKQIKKSGGESQHKDYNEDKDGSHYEKKKKKSSKESKSQVYNEFESKEGGDDDQGKHIKKIKKSGDESQHKDYNEDKNDSHYKKKKKKTSSKESKSQAYGEFESKEGDQPSARVKSIVTEVEDQSKTETKKKAKADTSESPNPGHSGSSKPKRATFSDQVDVCCDGLVRGKSQACNEFERNEGGDGDQGKKMKKKKLHDKSKNKENSELNSNEGDQPSARVKSIVTEVDDQSKTETKKKAKADTSESPNPGHSGSSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDKRIELAVFDYIESHGLGDEGLDMVLNCIHYPAVRDCWKEIGLALPERPQLSVYNRAHVLFERSEKRGWTPEELEFLRKMKEQHGSDWKSVAVALGKHRFHVKDAWRRIKSADANKGRWIQEEYQKLFDLVNVDLRGRASQVHRKTKHGMLRDNIGWEAIGDKFTRSSSSCCEKWYNKLTSPMVAHGVWSDTDDYRLVNALFTLDACCMEEVDWDNLIENRSGDVCRKRWNQMVQCIGEHGGKSFAEQIEILAKRFCPDLLEVREAFDAIPVSC 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00954 709 MobiDBLite consensus disorder prediction 97 308 - -
Cca02g00954 709 MobiDBLite consensus disorder prediction 35 58 - -
Cca02g00954 709 SUPERFAMILY Homeodomain-like 600 672 IPR009057 -
Cca02g00954 709 MobiDBLite consensus disorder prediction 270 289 - -
Cca02g00954 709 ProSiteProfiles Myb-like domain profile. 496 545 IPR001005 -
Cca02g00954 709 Pfam Myb-like DNA-binding domain 504 562 - -
Cca02g00954 709 Gene3D - 505 543 - -
Cca02g00954 709 CDD SANT 504 532 IPR001005 -
Cca02g00954 709 MobiDBLite consensus disorder prediction 290 306 - -
Cca02g00954 709 PANTHER GB|AAC33480.1 76 707 - -
Cca02g00954 709 SMART sant 500 547 IPR001005 -
Cca02g00954 709 SMART sant 550 616 IPR001005 -
Cca02g00954 709 SMART sant 427 498 IPR001005 -
Cca02g00954 709 SMART sant 620 671 IPR001005 -
Cca02g00954 709 SUPERFAMILY Homeodomain-like 501 562 IPR009057 -
Cca02g00954 709 MobiDBLite consensus disorder prediction 377 396 - -
Cca02g00954 709 PANTHER GB|AAC33480.1 76 707 - -
Cca02g00954 709 MobiDBLite consensus disorder prediction 324 412 - -
Cca02g00954 709 MobiDBLite consensus disorder prediction 100 233 - -
Cca02g00954 709 MobiDBLite consensus disorder prediction 326 343 - -
Cca02g00954 709 MobiDBLite consensus disorder prediction 397 412 - -
Cca02g00954 709 MobiDBLite consensus disorder prediction 41 57 - -
Cca02g00954 709 MobiDBLite consensus disorder prediction 243 261 - -
Cca02g00954 709 ProSiteProfiles Myb-like domain profile. 546 614 IPR001005 -
Cca02g00954 709 Gene3D - 544 619 - -
Cca02g00954 709 ProSiteProfiles Myb-like domain profile. 616 669 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00954 498 635 MYB Transcription Factor Family AT3G09370 28.369 3.80e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca02g00954 Myb_DNA-bind_6 9.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00954 - - gmx:100785842 781.556