Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00953 ATGGCTACTGCTGCCAATCCTGCGGTTGGTTCCCAAGTTTGGGTGGAGGATTCTCAAGTAGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAGGGGGAAGAAATCAAAGTCCTTTGTACTTCAGGGAAGACGGTTGTTGTTAAATCTTCTAGTGTTTATCATAAAGATACTGAAGCCCCACCATGTGGAGTGGATGACATGACAAAGCTTGCTTATTTACATGAACCTGGTGTCCTGGATAATCTGAGATCAAGATATGATATCAATGAAATTTATACATACACCGGGAATATATTGATTGCTGTGAATCCTTTCATAAAGCTTCCTCATTTATACGATAGCCATATGATGGCACAATATAAAGGAGCAGGTTTTGGTGAGCTAAGTCCACATCCTTTTGCTGTTGCAGATGCAGCATATAGACTCATGATTAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGGAAAACAGAAAGCACAAAGTTACTTATGCGCTATCTTGCTTACATGGGAGGGAGAGTTAACAGTGCTGCTGAAGGTAGAACTGTAGAACAGAAAGTCCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAAGGGAAGAATTTCTGGGGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCAGAGGATATTCAGAAGTATAAATTAGGAAATCCTAGAGGATTTCATTATCTGAATCAATCAAATTGCTTTGAGTTGGAAGGGGTTGATGAGTTAAAAGAATACCGTGATACTAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGACGAGCAGGAAGCAATATTTCGAGTGGTTGCTGCAATTTTGCATCTTGGTAACATTGAATTTACAAAAGGGGAAGAAATTGACTCTTCTGTGCCCAAAGATGAAAAATCTTGGTTGCATCTACACACTGCTGCTGAACTTTTCATGTGTGATGCCAAGGCTCTTGAAGATTCTCTGTGCAAGCGTGTAATTGTTACTCGTGATGAGACTATAACAAAATGGCTGGATCCAGAAGCTGCTGCACTCAGCCGAGATGCTTTGGCTAAGATTGTGTACACAAGGTTGTTTGATTGGCTGGTGGATAAAATTAATAATTCAATTGGTCAAGACCCTGACTCAAAGTCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATCAATTTGACCAATGAAAAGCTTCAGCAGCATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAGATTGATTGGAGTTACATTGAGTTTGTTGATAATCAAGATGTTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTGTTGCTCTTCTTGATGAAGCTTGTATGTTTCCTAGATCAACACATGAAACCTTTGCCCAAAAGCTGTATCAGACATTCAAAAATCATAAAAGATTCAGCAAGCCCAAATTGTCACGTAGTGACTTCACAATTTGCCATTATGCGGGTGATGTCACTTATCAAACTGAATTATTCCTGGACAAGAACAAAGATTATGTTGTTGCGGAACACCAAGCTCTTCTTTATGCTTCCAAATGTCCCTTTGTGTCTGGTTTGTTCCCCCCTTCACCCGAGGAATCGTCTAAACAATCAAAGTTCTCTTCAATAGGTTCCCGGTTTAAGCAACAATTGCAAGCACTACTGGAAACTCTCAGTGCCACTGAGCCCCACTACATTCGCTGTGTTAAACCTAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCAGCAACTGCGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGCTGTGCTGGTTTTCCAACCAGGAAAACTTTTGATGAATTTGCAGATCGATTTGGACTTCTTGCTCCTGAAGCTTTGGACGGGAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTGGAAAAGGTTGGACTTAAGGGCTATCAGATTGGTAAAACAAAAGTGTTTCTTCGAGCTGGTCAAATGGCAGATCTAGATACTCGTAGAAGTGAGATTTTAGGAAAGTCAGCAAGCATTATTCAGAGGAAAGTGCGTACCTATTTGGCCCGCCGAAGTTTTGTCTTGATACGTTTGTCTGCTATACAGATTCAAGCTGCATGTAGAGCACAACTTGCTCGGCAAGTTTATGAGGGATTGCAACGGGAGGCTTCTAGTCTGATGATTCAGAGGTATTTCCGCATGCATGTTTCTAGGAAGACATATAAAGAATTGTATATCTCGGCTGTTTCTATTCAAACTGGTCTGCGAGGGATGGCTGCTCGTAGCGAGCTTCGCTTCAGGAAGCAAACTAGTGCTGCTACTGTCATTCAGAGCCACTGCCGGAAATACCTGGCACAACATCATTTTACAAACTTAAAGAAGGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGACAAGAATTAAGAAAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAACAAGCTTGAAAAGCAAGTTGAAGACCTTACATTGAGATTGCAGCTGGAAAAACGCTTGAGGGTCGACATTGAAGAATCAAAAACACATGAAAATGAAAAATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTTATTACTTCAAAAGGAGCGTGAGGCTGCAAAAAGAGAAGCAGAGAGAGCGCCTCTCATACAGGAGGTTCCTGTTGTTGACCATTCTTTGTTGGAGAAGCTTACTAGTGAAAATGAGAAGCTCAAGACCTTGGTGAGTTCATTGGAAAAGAAAATTGATGAAACAGAAAAAAGATATGAAGAGGCAAACAAAATTAGTGAAGAAAGGTTGAAGCAAACTTTAGATGCTGAAACAAAAATAATCCAGTTGAAGACTGCTATGCAAAGGCTCGAAGATAAATTCTCAGATATGGAATCTGAAAATCAGGTTCTTCGGCAACAGTCTCTGCTAAACTCATCTGCAAAAACAATGTCAGAACACCTTTCTACCCACGTATCCGAGAAGTTGGAAAATGGTCACCACATGGTGGAAGATCAGAAAGCTGCATTGTGTTTGCAGGAAGCAGAGAGTGTCACACCTGTGAAGAAGTTTGGTACAGACTCTGATGGCAAATTGAGGAGATCCATGATTGAACGTCAACATGAGAATGTTGATGCACTTGTCAACTGTGTTATGAAAAGTATTGGTTTCCATCACGGAAAGCCTGTTGCTGCATTTACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATAATCTTATGGCCTATTGGCTGTCAAATTTGTCTGCACTATTGTTTTTGCTCCAGCAAAGTCTGAAATCTGGTGGTGCAACTGATGCAACTCCTGTCAAAAAACCACCAAATCCGACATCCCTCTTTGGAAGAATGACTATGGGTTTTCGTTCATCTCCTTCTTCTGCCAGCCTTCCTACCCCACCGTCGGATGTTGTACGCAAGGTAGAAGCTAAATATCCTGCTTTGCTTTTCAAGCAACAGCTCACTGCTTATGTTGAGAAAATATACGGTATCCTTCGGGACAACTTGAAGAAAGAATTGTCATCATTGCTTTCGTCATGTATCCAGGCACCAAGAACATCTAAGGGAGTGCTACGATCTGGCCGGTCCTTTGGTAAAGATTCTCCCATGGGTCACTGGCAGAGTATTATAGAATCCCTAAACACTCTCCTTTGTACTCTGAAAGAGAACTTTGTACCTCCAGTCCTTATACAAAAGATCTTCACTCAAACATTCTCATATATTAATGTTCAACTCTTCAATAGTCTTCTTCTGCGTCGTGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGTTGTGGTGCTGCCAAGCAAAAGAGGAGTATGCAGGTTCATCTTGGGATGAGCTTAAGCACATAAGACAAGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTACGATGAAATCATAAATGATTTATGCCCAGTCATGAGTGTCCAGCAGTTGTACAGAATATGTACACTTTACTGGGATGCTAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTTAAGCATGAAGGTTCTTATGACAGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGTATCCCCTTCTCAGTGGATGACCTCTCTACATCACTACAAGAGAAGGATTTCTCAGACATGAAACCAGCGGATGAGCTGCTCGAGAATCCTGCCTTCATATTTTTAAATGAGTAG 4557 0.409 MATAANPAVGSQVWVEDSQVAWIDGEVLEVKGEEIKVLCTSGKTVVVKSSSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAGFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRVNSAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDIQKYKLGNPRGFHYLNQSNCFELEGVDELKEYRDTRRAMDVVGISSDEQEAIFRVVAAILHLGNIEFTKGEEIDSSVPKDEKSWLHLHTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGFPTRKTFDEFADRFGLLAPEALDGSSDEVTACKRILEKVGLKGYQIGKTKVFLRAGQMADLDTRRSEILGKSASIIQRKVRTYLARRSFVLIRLSAIQIQAACRAQLARQVYEGLQREASSLMIQRYFRMHVSRKTYKELYISAVSIQTGLRGMAARSELRFRKQTSAATVIQSHCRKYLAQHHFTNLKKAAITTQCAWRGKVARQELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDIEESKTHENEKLQSALQEMQLQFKETKLLLQKEREAAKREAERAPLIQEVPVVDHSLLEKLTSENEKLKTLVSSLEKKIDETEKRYEEANKISEERLKQTLDAETKIIQLKTAMQRLEDKFSDMESENQVLRQQSLLNSSAKTMSEHLSTHVSEKLENGHHMVEDQKAALCLQEAESVTPVKKFGTDSDGKLRRSMIERQHENVDALVNCVMKSIGFHHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNNLMAYWLSNLSALLFLLQQSLKSGGATDATPVKKPPNPTSLFGRMTMGFRSSPSSASLPTPPSDVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELSSLLSSCIQAPRTSKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFVPPVLIQKIFTQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPVMSVQQLYRICTLYWDANYNTRSVSPDVLLSMKVLMTEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFIFLNE 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00953 1518 Pfam Myosin head (motor domain) 64 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Cca02g00953 1518 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Cca02g00953 1518 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Cca02g00953 1518 ProSiteProfiles IQ motif profile. 785 814 IPR000048 GO:0005515
Cca02g00953 1518 Coils Coil 918 952 - -
Cca02g00953 1518 CDD MyosinXI_CBD 1114 1487 IPR037975 GO:0007015
Cca02g00953 1518 PANTHER MYOSIN-14 5 1516 - -
Cca02g00953 1518 Gene3D Kinesin motor domain 65 664 IPR036961 -
Cca02g00953 1518 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 885 IPR027417 -
Cca02g00953 1518 Gene3D - 441 625 - -
Cca02g00953 1518 SMART iq_5 784 806 IPR000048 GO:0005515
Cca02g00953 1518 SMART iq_5 736 758 IPR000048 GO:0005515
Cca02g00953 1518 SMART iq_5 807 829 IPR000048 GO:0005515
Cca02g00953 1518 SMART iq_5 855 877 IPR000048 GO:0005515
Cca02g00953 1518 SMART iq_5 832 854 IPR000048 GO:0005515
Cca02g00953 1518 SMART iq_5 759 781 IPR000048 GO:0005515
Cca02g00953 1518 Coils Coil 974 1050 - -
Cca02g00953 1518 Gene3D - 737 786 - -
Cca02g00953 1518 Gene3D - 787 834 - -
Cca02g00953 1518 Gene3D - 835 884 - -
Cca02g00953 1518 PANTHER MYOSIN 5 1516 - -
Cca02g00953 1518 SMART DIL_2 1339 1446 IPR002710 -
Cca02g00953 1518 SMART MYSc_2a 57 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 ProSiteProfiles Dilute domain profile. 1163 1464 IPR002710 -
Cca02g00953 1518 Gene3D - 254 312 - -
Cca02g00953 1518 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Cca02g00953 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 787 IPR027417 -
Cca02g00953 1518 ProSiteProfiles Myosin motor domain profile. 62 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 Pfam IQ calmodulin-binding motif 763 780 IPR000048 GO:0005515
Cca02g00953 1518 Pfam IQ calmodulin-binding motif 858 877 IPR000048 GO:0005515
Cca02g00953 1518 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Cca02g00953 1518 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Cca02g00953 1518 Pfam IQ calmodulin-binding motif 788 806 IPR000048 GO:0005515
Cca02g00953 1518 Pfam DIL domain 1340 1443 IPR002710 -
Cca02g00953 1518 ProSiteProfiles IQ motif profile. 811 837 IPR000048 GO:0005515
Cca02g00953 1518 Coils Coil 879 913 - -
Cca02g00953 1518 CDD MYSc_Myo11 76 722 IPR036018 -
Cca02g00953 1518 Pfam Myosin N-terminal SH3-like domain 9 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca02g00953 1518 Gene3D - 668 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00953 Cca-Chr2 25625055 25644076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00953 1 1517 Myosins gene family AT5G43900 74.901 0.0 2354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00953 K10357 - gmx:100791070 2797.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00953 02 25625055 25644076 Cca02g00953 02 25625055 25644076 ECH
Cca03g02272 03 43608883 43626107 Cca02g00953 02 25625055 25644076 PCT
Cca03g03061 03 52048398 52066818 Cca02g00953 02 25625055 25644076 PCT