Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00943 ATGAACGACTGTGTTCCAGATTTCGAAATCCAAATGGAGGAAGAGGAAGAAAACCCAATTCCTGTCTCAAAGAAAGCTTCTACGCAAAACGACGACATCATGGAACTCTTGTGGCAAAACGGCCAGGTCGTCATGCAAAGCCAAAACCAACGACCCATCAGAAAACCGCCGAGGGAGATTCGATCCTCCGAGCCACAAAACTACGCTAATAACCAACACCTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTCCACTATCCAATCCACCAAGATCCTCCTCCCTTAGATCACCACAATTTTTCCGCCGACATCTTCTACCCGCCGCCAAACGCCGCCCTGCAATGctccgttcgcgccgaccacctccgccatccgcctcctcggcctccgattccgccgccgAGCAGGATGCACAATTTCGTGCACTTCTCCAAGCACGCCAATGCGTCGCTCAGTTCGAAGGTCGCGGCGGCGCAGCCCACGGTGGTGGATTCGTGCGACACGCCGGTTGCCACGGCGGACCGCGTGGAAACCGCCCGAGCGAGCGGCGGTAAACCGGCGGCGCCTGGCGGAGGAAGGGAGACGGCGACGTGCGACATGACGGTGACGTCGTCGCCCGGCGGTTCGAGCGGGAGCGCCGAACCGGATCAGAGAGAAGCGGCGGTGGACCGCAAGAGGAAGGGAAGGGAAGCGGAGGAATCGGAGTTTCAGAGCGAGGATGTCGATTTTGAATCTCCGGAAGCTAAAAAACAAGTCCGTGGTTCTACATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAGAGGAGGCGACGAGATAGAATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTGCCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCaatgggaatgggcattggcatggggatgggcatggaaatgggaatgggaatgAACAGACCTGTAATGACATTTCCAAATATGTTAGCTAGTTCGACTTTGCCAGCGGCAACTGCAGCTGCTCATTTGGGACCAAGGTTCCCCATGCCTCCTTTCCATATGCCTCATGTTGCCGCACCCGATTCATCCAGAGTGCAAGCAGCAAATCACTCAGACAATACTATGCTTAACTCACATGGTACACTAGATCCAGATCAATCACGTATCCCAAACTTCACCGATCCTTATCACCAATACCTACAATTAATGCAGGCAATGAACCAACCAAATGTCAGCAAGCCTAGTACCAGTAGGGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACGAAACATGA 1410 0.4738 MNDCVPDFEIQMEEEEENPIPVSKKASTQNDDIMELLWQNGQVVMQSQNQRPIRKPPREIRSSEPQNYANNQHLFMQEDEMASWLHYPIHQDPPPLDHHNFSADIFYPPPNAALQCSVRADHLRHPPPRPPIPPPSRMHNFVHFSKHANASLSSKVAAAQPTVVDSCDTPVATADRVETARASGGKPAAPGGGRETATCDMTVTSSPGGSSGSAEPDQREAAVDRKRKGREAEESEFQSEDVDFESPEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMGMNRPVMTFPNMLASSTLPAATAAAHLGPRFPMPPFHMPHVAAPDSSRVQAANHSDNTMLNSHGTLDPDQSRIPNFTDPYHQYLQLMQAMNQPNVSKPSTSRGQENPEKHQSDET 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00943 469 Pfam Helix-loop-helix DNA-binding domain 267 313 IPR011598 GO:0046983
Cca02g00943 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 312 IPR011598 GO:0046983
Cca02g00943 469 MobiDBLite consensus disorder prediction 45 64 - -
Cca02g00943 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 341 IPR036638 GO:0046983
Cca02g00943 469 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 468 - -
Cca02g00943 469 SMART finulus 269 318 IPR011598 GO:0046983
Cca02g00943 469 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 468 IPR031066 -
Cca02g00943 469 MobiDBLite consensus disorder prediction 198 213 - -
Cca02g00943 469 Gene3D - 258 321 IPR036638 GO:0046983
Cca02g00943 469 Coils Coil 269 289 - -
Cca02g00943 469 MobiDBLite consensus disorder prediction 443 469 - -
Cca02g00943 469 MobiDBLite consensus disorder prediction 176 275 - -
Cca02g00943 469 MobiDBLite consensus disorder prediction 218 235 - -
Cca02g00943 469 CDD bHLH_AtPIF_like 263 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00943 Cca-Chr2 25444395 25451123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00943 1 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.504 2.95e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g00943 HLH 5.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00943 - - gmx:100788491 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00943 02 25444395 25451123 Cca02g00943 02 25444395 25451123 ECH
Cca03g02280 03 43757055 43763734 Cca02g00943 02 25444395 25451123 PCT