Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00927 ATGGGAGAAGAAGCGATTTGTGTGCATGCATTAGAAGAAGGAAGGAAGGAAAACAATGAGGAATCAAGGACCGAACTGAAGCGTGACTACAACCAATGCATTGTTGACACTGAACCTCACCTGTCTCCTAATAAGAAACAAGCAAAAGAAGTTTCAATTGATGAAGTGCGCTCCGAGGTTTCCAACCCGAACGTTTCTGCAGCAGAGCATGCGCTAACTTTCCAAGATATCAGTAGCCAACCAACTGAATCGGCCAATGTTAGTCAACCGACTGAATCCGCCAATGTTAGCCACGCAGAGTGTGGGGAACTAACGTCTACTTGTTTGGAGAATTCAAGTTCTGTTGAGACCTTGAGTGATGAAGCCGGTGATCAGAATAATAACAATACTTCTCAGAGTGATAAGGACACGAGTAGTGCTGCAATGACATCCTGTGTCGTGATGGAAATTCCCAAGCATGCTAGTTCATCTGGGATCAGGAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGGTTACCAGCCACCTGCTCCTGTGCATCGTCCTGCTCTTTATACTGATGGCAATCCCATTGGCTTTCATGGGTATGATGAAGAATATTCGGCAAGGGATGATTGTAGTGGTGGGATGCTAGAAAGCCCGTGTGGAATGGGATATTCTCGGGATGGAGATTTAGATTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTTCCCAGCTGCTACCCTACAAATGTTAAAAAACTGTTATCAACCGGCATCCTTGACGGAGCTATAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTGCAGGGGGTTATTGAGGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTACGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAGGTTTGGAAAGAAAGTCTTCTACAAAGCAACGGCAGGGTTCAAGCTTATAAAAATTATGGCACCAAGCTTGTTGGCATGCCTCATACAAAGATAAGTCAATCTGTAGATGGTACAAGTCACTTGTCATCTTTGCATGTACCAAGTCATTATGAGCAGCAAATGTATATGAATCAGACCACTGACGAGTGGAAACGTGTGGTGAAAAAGTCAAGCTCCTACACTTCTAACTCAGGTGTACTGCTGAAGAAAAGTGCTGATGGTTGCACCAAGAGAAGGGACAACGATTTACACAGGTTACTTTTTATGCCAAATGGACTACCAGATGGTGCTGAATTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGGAACGGAATAGTCTGTGCTTGTTGTGATATGGAGATAAGCCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCTAGGCGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCATTGGCAAATGGTCAAAACCTTACCACTGGAGACAGCGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGCTGGTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGAATTTGAGATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAGCGAACTGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTAGCTCTGCAGAATTCAGTTTCTGCTGGAGCAGACATTATTCCAGCTTCGTTGTCAGAAAGGTTAATCAGGAAACATGCCGAGAAGGGATTATGTACCTATGGGGTCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCGCTGCTTTCTCGAGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCAGGTCAAGAGTTTGGGGGGATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTCCTTAGGATTTTTGGACGTAATGTTGCTGAACTACCTCTGGTCGCAACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGCGGTTGCTGTATTCTCTAAATGTAGAAAAGCTGGTGCTTCCAGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGCGAAGATCAGCTATCCAAATACCTCAGAGAGGTGCAGCTAACCCTCTTCAATAAAACTTCAATGCTGGAGAAGACGGTGCAGCAGGCTATAGAATGA 2685 0.4276 MGEEAICVHALEEGRKENNEESRTELKRDYNQCIVDTEPHLSPNKKQAKEVSIDEVRSEVSNPNVSAAEHALTFQDISSQPTESANVSQPTESANVSHAECGELTSTCLENSSSVETLSDEAGDQNNNNTSQSDKDTSSAAMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYGYQPPAPVHRPALYTDGNPIGFHGYDEEYSARDDCSGGMLESPCGMGYSRDGDLDLYTRNMELKMSKKVVPSCYPTNVKKLLSTGILDGAIVKYIYNPGKVELQGVIEGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQVWKESLLQSNGRVQAYKNYGTKLVGMPHTKISQSVDGTSHLSSLHVPSHYEQQMYMNQTTDEWKRVVKKSSSYTSNSGVLLKKSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCACCDMEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCRDNAGNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADIIPASLSERLIRKHAEKGLCTYGVMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRAHQGKGYFQVLFSCIERLLYSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLREVQLTLFNKTSMLEKTVQQAIE 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00927 894 Gene3D - 720 888 - -
Cca02g00927 894 ProSitePatterns Zinc finger PHD-type signature. 550 589 IPR019786 -
Cca02g00927 894 MobiDBLite consensus disorder prediction 75 98 - -
Cca02g00927 894 Pfam PHD-finger 549 590 IPR019787 -
Cca02g00927 894 CDD PHD1_AIRE 549 589 - -
Cca02g00927 894 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 2 891 - -
Cca02g00927 894 MobiDBLite consensus disorder prediction 110 140 - -
Cca02g00927 894 Pfam Tify domain binding domain 278 332 IPR032308 -
Cca02g00927 894 Pfam Tify domain binding domain 483 532 IPR032308 -
Cca02g00927 894 SUPERFAMILY FYVE/PHD zinc finger 620 676 IPR011011 -
Cca02g00927 894 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 773 864 IPR016181 -
Cca02g00927 894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 681 IPR013083 -
Cca02g00927 894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 543 615 IPR013083 -
Cca02g00927 894 ProSiteProfiles Zinc finger PHD-type profile. 547 592 IPR019787 -
Cca02g00927 894 ProSitePatterns Zinc finger PHD-type signature. 623 678 IPR019786 -
Cca02g00927 894 SUPERFAMILY FYVE/PHD zinc finger 545 592 IPR011011 -
Cca02g00927 894 MobiDBLite consensus disorder prediction 42 56 - -
Cca02g00927 894 MobiDBLite consensus disorder prediction 35 62 - -
Cca02g00927 894 SMART PHD_3 549 590 IPR001965 -
Cca02g00927 894 SMART PHD_3 622 679 IPR001965 -
Cca02g00927 894 PANTHER AUTOIMMUNE REGULATOR 2 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00927 Cca-Chr2 25149904 25159131 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00927 1 889 PHD Transcription Factor Family AT3G53680 51.934 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca02g00927 TDBD 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00927 - - gmx:100808999 1665.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00927 02 25149904 25159131 Cca02g00927 02 25149904 25159131 ECH