Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g00927 | ATGGGAGAAGAAGCGATTTGTGTGCATGCATTAGAAGAAGGAAGGAAGGAAAACAATGAGGAATCAAGGACCGAACTGAAGCGTGACTACAACCAATGCATTGTTGACACTGAACCTCACCTGTCTCCTAATAAGAAACAAGCAAAAGAAGTTTCAATTGATGAAGTGCGCTCCGAGGTTTCCAACCCGAACGTTTCTGCAGCAGAGCATGCGCTAACTTTCCAAGATATCAGTAGCCAACCAACTGAATCGGCCAATGTTAGTCAACCGACTGAATCCGCCAATGTTAGCCACGCAGAGTGTGGGGAACTAACGTCTACTTGTTTGGAGAATTCAAGTTCTGTTGAGACCTTGAGTGATGAAGCCGGTGATCAGAATAATAACAATACTTCTCAGAGTGATAAGGACACGAGTAGTGCTGCAATGACATCCTGTGTCGTGATGGAAATTCCCAAGCATGCTAGTTCATCTGGGATCAGGAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGGTTACCAGCCACCTGCTCCTGTGCATCGTCCTGCTCTTTATACTGATGGCAATCCCATTGGCTTTCATGGGTATGATGAAGAATATTCGGCAAGGGATGATTGTAGTGGTGGGATGCTAGAAAGCCCGTGTGGAATGGGATATTCTCGGGATGGAGATTTAGATTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTTCCCAGCTGCTACCCTACAAATGTTAAAAAACTGTTATCAACCGGCATCCTTGACGGAGCTATAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTGCAGGGGGTTATTGAGGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTACGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAGGTTTGGAAAGAAAGTCTTCTACAAAGCAACGGCAGGGTTCAAGCTTATAAAAATTATGGCACCAAGCTTGTTGGCATGCCTCATACAAAGATAAGTCAATCTGTAGATGGTACAAGTCACTTGTCATCTTTGCATGTACCAAGTCATTATGAGCAGCAAATGTATATGAATCAGACCACTGACGAGTGGAAACGTGTGGTGAAAAAGTCAAGCTCCTACACTTCTAACTCAGGTGTACTGCTGAAGAAAAGTGCTGATGGTTGCACCAAGAGAAGGGACAACGATTTACACAGGTTACTTTTTATGCCAAATGGACTACCAGATGGTGCTGAATTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGGAACGGAATAGTCTGTGCTTGTTGTGATATGGAGATAAGCCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCTAGGCGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCATTGGCAAATGGTCAAAACCTTACCACTGGAGACAGCGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGCTGGTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGAATTTGAGATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAGCGAACTGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTAGCTCTGCAGAATTCAGTTTCTGCTGGAGCAGACATTATTCCAGCTTCGTTGTCAGAAAGGTTAATCAGGAAACATGCCGAGAAGGGATTATGTACCTATGGGGTCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCGCTGCTTTCTCGAGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCAGGTCAAGAGTTTGGGGGGATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTCCTTAGGATTTTTGGACGTAATGTTGCTGAACTACCTCTGGTCGCAACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGCGGTTGCTGTATTCTCTAAATGTAGAAAAGCTGGTGCTTCCAGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGCGAAGATCAGCTATCCAAATACCTCAGAGAGGTGCAGCTAACCCTCTTCAATAAAACTTCAATGCTGGAGAAGACGGTGCAGCAGGCTATAGAATGA | 2685 | 0.4276 | MGEEAICVHALEEGRKENNEESRTELKRDYNQCIVDTEPHLSPNKKQAKEVSIDEVRSEVSNPNVSAAEHALTFQDISSQPTESANVSQPTESANVSHAECGELTSTCLENSSSVETLSDEAGDQNNNNTSQSDKDTSSAAMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYGYQPPAPVHRPALYTDGNPIGFHGYDEEYSARDDCSGGMLESPCGMGYSRDGDLDLYTRNMELKMSKKVVPSCYPTNVKKLLSTGILDGAIVKYIYNPGKVELQGVIEGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQVWKESLLQSNGRVQAYKNYGTKLVGMPHTKISQSVDGTSHLSSLHVPSHYEQQMYMNQTTDEWKRVVKKSSSYTSNSGVLLKKSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCACCDMEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCRDNAGNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADIIPASLSERLIRKHAEKGLCTYGVMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRAHQGKGYFQVLFSCIERLLYSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLREVQLTLFNKTSMLEKTVQQAIE | 894 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g00927 | 894 | Gene3D | - | 720 | 888 | - | - | |
Cca02g00927 | 894 | ProSitePatterns | Zinc finger PHD-type signature. | 550 | 589 | IPR019786 | - | |
Cca02g00927 | 894 | MobiDBLite | consensus disorder prediction | 75 | 98 | - | - | |
Cca02g00927 | 894 | Pfam | PHD-finger | 549 | 590 | IPR019787 | - | |
Cca02g00927 | 894 | CDD | PHD1_AIRE | 549 | 589 | - | - | |
Cca02g00927 | 894 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 2 | 891 | - | - | |
Cca02g00927 | 894 | MobiDBLite | consensus disorder prediction | 110 | 140 | - | - | |
Cca02g00927 | 894 | Pfam | Tify domain binding domain | 278 | 332 | IPR032308 | - | |
Cca02g00927 | 894 | Pfam | Tify domain binding domain | 483 | 532 | IPR032308 | - | |
Cca02g00927 | 894 | SUPERFAMILY | FYVE/PHD zinc finger | 620 | 676 | IPR011011 | - | |
Cca02g00927 | 894 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 773 | 864 | IPR016181 | - | |
Cca02g00927 | 894 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 619 | 681 | IPR013083 | - | |
Cca02g00927 | 894 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 543 | 615 | IPR013083 | - | |
Cca02g00927 | 894 | ProSiteProfiles | Zinc finger PHD-type profile. | 547 | 592 | IPR019787 | - | |
Cca02g00927 | 894 | ProSitePatterns | Zinc finger PHD-type signature. | 623 | 678 | IPR019786 | - | |
Cca02g00927 | 894 | SUPERFAMILY | FYVE/PHD zinc finger | 545 | 592 | IPR011011 | - | |
Cca02g00927 | 894 | MobiDBLite | consensus disorder prediction | 42 | 56 | - | - | |
Cca02g00927 | 894 | MobiDBLite | consensus disorder prediction | 35 | 62 | - | - | |
Cca02g00927 | 894 | SMART | PHD_3 | 549 | 590 | IPR001965 | - | |
Cca02g00927 | 894 | SMART | PHD_3 | 622 | 679 | IPR001965 | - | |
Cca02g00927 | 894 | PANTHER | AUTOIMMUNE REGULATOR | 2 | 891 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g00927 | Cca-Chr2 | 25149904 | 25159131 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g00927 | 1 | 889 | PHD Transcription Factor Family | AT3G53680 | 51.934 | 0.0 | 895 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Cca02g00927 | TDBD | 1.1e-13 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g00927 | - | - | gmx:100808999 | 1665.59 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca02g00927 | 02 | 25149904 | 25159131 | Cca02g00927 | 02 | 25149904 | 25159131 | ECH |