Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00918 ATGTCTTTCCATAATCAAGCACTTTGGATGGGGAAGAGTCCTGGGTGTTTGAATGACGATGACATGACAAATGACAGTTTTTCTGGAATTGAGTCCAAGCGCACTCATCAGTGGTTCATGGATGGCCCTGAAGTGGATCTGTATCCCAATAAGAAGCAAGCAGTAGAAGCTCCAAATAATTTATTATCTGGAATGCTCAACTCCAATATTTCCTCTTGGGAAAATTCCTCAGGATTTCACTCTTTAAATGGTCATTTTACTGAACAATTATATGTCCCAGATCCAGTAACCATGAATTTTGAAGATGCAAACACTCCCTCGGGTAGCATAGATAATACACTGAGTGTGGAAAGAAAGGATAGCATGGATCCCTTTGGAGGCGAGTCCTCATTTGGTTTATCCATCTCAACTGCATTAGAAGATCCTCGTTTAGTTTTTAATTATGATGGATTTAGAAAAGTCAAAGATAACGAGGTGAAGGAATCTGAGAATGTCATGTCTGTTACTGCAAATAATCCCTATGATAGCATAGTTAGTGAGACTGTGTCAAATTCTTGTCTATACAAGGAGATCGATAAGTCCATATCAACGAATCTCACCTACAACAAAGGGGTTGCCAATATAATATCAATGGATGATGCATATGGCAGGACAGACAACAATTTCATGTCGATGAGTCAATCCTATAGCAAGGGAAATGACAGCTTATCTTTACATCCAACATTCAATGAGATATGTAATAGGATATCATCAATGGATCAGGGCTTCAGTGAGGTGGACAGTAATGTGATATCTATTGCTCAAGCTTACAACAAAGTCCCGGACAATTCTGTGTTAACTAACCATTTATACAATGAGGCTGATAATGGCACTATATCAGTGCATCACACCTACCACAAAGAGGGAAATGACGTGCCATTTGCTTCTCATTCCTATAATAGAGGAGAGAGCACTATCATATCCTTTGGTGGCTGTGATGATGATGACACAACTCCCTCTGACTTGTTCATTTCCAACTATGAACTCCTGATGTGTCAAGCACTTTCAAACAAGTCAGAAGCCGTGAATGAGAAAGATTTGCTTAGATCTAGTTCTAGTTTACTTCCAAGTACAGCTCATACATCTGCACCTGAAACTGAAAACGTTACCAAGACAAAAGAGGAGATGAAAATGTCTAAAAAAGCCACTTCAAACAACTTCCCTTCAAACGTCAGAAGTTTGCTATCCACTGGTATGCTGGATGGTCTCTCAGTGAAGTATAAGGCATGGTCACGGGAGAAGGAACTTCGAGGTGTTATAAAAGGTGCTGGGTATTTGTGCAGTTGCCATTCGTGTAATTTTTCCAAGGTTATTAATGCATATGAATTTGAGCGACATGCTGGATGCAAGACAAAACACCCCAATAATCATATTTACTTTGATAATGGGAAAACTATATATGGGGTTGTACAAGAGCTCAGGAGCACTCCACAGAGCATGTTGTTTGAAGTTATTCAGACTATAACTGGTTCACCTATCAATCAGAAATCCTTCTGCATTTGGAAAGAATCCTTTTTGGCTGCAGCAGGGAACTCAAGCGCACACGTGGAAAACAAGAAGTAA 1602 0.397 MSFHNQALWMGKSPGCLNDDDMTNDSFSGIESKRTHQWFMDGPEVDLYPNKKQAVEAPNNLLSGMLNSNISSWENSSGFHSLNGHFTEQLYVPDPVTMNFEDANTPSGSIDNTLSVERKDSMDPFGGESSFGLSISTALEDPRLVFNYDGFRKVKDNEVKESENVMSVTANNPYDSIVSETVSNSCLYKEIDKSISTNLTYNKGVANIISMDDAYGRTDNNFMSMSQSYSKGNDSLSLHPTFNEICNRISSMDQGFSEVDSNVISIAQAYNKVPDNSVLTNHLYNEADNGTISVHHTYHKEGNDVPFASHSYNRGESTIISFGGCDDDDTTPSDLFISNYELLMCQALSNKSEAVNEKDLLRSSSSLLPSTAHTSAPETENVTKTKEEMKMSKKATSNNFPSNVRSLLSTGMLDGLSVKYKAWSREKELRGVIKGAGYLCSCHSCNFSKVINAYEFERHAGCKTKHPNNHIYFDNGKTIYGVVQELRSTPQSMLFEVIQTITGSPINQKSFCIWKESFLAAAGNSSAHVENKK 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00918 533 PANTHER AUTOIMMUNE REGULATOR 5 526 - -
Cca02g00918 533 MobiDBLite consensus disorder prediction 366 385 - -
Cca02g00918 533 PANTHER PROTEIN, PUTATIVE-RELATED 5 526 - -
Cca02g00918 533 Pfam Tify domain binding domain 431 486 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00918 Cca-Chr2 25001325 25004102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00918 373 518 PHD Transcription Factor Family AT3G53680 53.425 4.14e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00918 - - gmx:100794765 843.188