Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g00915 | ATGAAGAGACTGCGAGAAGGAGTAGCGAACATAGATTTGGGAAATTGTCTAATGCTCCTGGCTCAGTCTCAGCCCAGAGAAAGCAAGCCCCAGAAACTTTTGGGCCCGGTTGAATTTGAGTGCAGGACCTGCAACCGCAAATTCTCTTCGTTCCAAGCCCTCGGTGGGCACAGGGCCAGCCACAAGAAGCCCAAACTAGAGGGGAAGATTCTGAGGTTGGGGAACAAGCCCAAAACGCACGACTGCTCCATTTGCGGTCAGCGATTCTCTTTGGGCCAGGCATTGGGAGGACACATGAAGAGGCACAGAGTTGCCAACAATGAAGGCGACATTTCTTCGATCAATGAGGCTGAGGTTGTTGCAAAAGTACCGGTTGTTAAAAGGTCCAATAGTACGAGAGTTTTGTGCTTGGACTTGAACTTGACTCCTCTTCAGAATGACCTCAACTTGTTGTTTGGAGACAAGGCACCCATACTTGTTGATTTATTCACATGA | 495 | 0.4889 | MKRLREGVANIDLGNCLMLLAQSQPRESKPQKLLGPVEFECRTCNRKFSSFQALGGHRASHKKPKLEGKILRLGNKPKTHDCSICGQRFSLGQALGGHMKRHRVANNEGDISSINEAEVVAKVPVVKRSNSTRVLCLDLNLTPLQNDLNLLFGDKAPILVDLFT | 164 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g00915 | 164 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 39 | 66 | IPR013087 | - | |
Cca02g00915 | 164 | Pfam | C2H2-type zinc finger | 80 | 103 | - | - | |
Cca02g00915 | 164 | Pfam | C2H2-type zinc finger | 39 | 64 | - | - | |
Cca02g00915 | 164 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 41 | 61 | IPR013087 | - | |
Cca02g00915 | 164 | SUPERFAMILY | beta-beta-alpha zinc fingers | 39 | 102 | IPR036236 | - | |
Cca02g00915 | 164 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 82 | 102 | IPR013087 | - | |
Cca02g00915 | 164 | SMART | c2h2final6 | 80 | 102 | IPR013087 | - | |
Cca02g00915 | 164 | SMART | c2h2final6 | 39 | 61 | IPR013087 | - | |
Cca02g00915 | 164 | Gene3D | Classic Zinc Finger | 37 | 102 | - | - | |
Cca02g00915 | 164 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 80 | 102 | IPR013087 | - | |
Cca02g00915 | 164 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 2 | 157 | - | - | |
Cca02g00915 | 164 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 2 | 157 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g00915 | Cca-Chr2 | 24923576 | 24924295 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g00915 | 1 | 162 | C2H2 Transcription Factor Family | AT2G37430 | 46.154 | 3.30e-43 | 139 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Cca02g00915 | zf-C2H2_6 | 8.8e-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g00915 | - | - | gmx:100793243 | 228.409 |