Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00915 ATGAAGAGACTGCGAGAAGGAGTAGCGAACATAGATTTGGGAAATTGTCTAATGCTCCTGGCTCAGTCTCAGCCCAGAGAAAGCAAGCCCCAGAAACTTTTGGGCCCGGTTGAATTTGAGTGCAGGACCTGCAACCGCAAATTCTCTTCGTTCCAAGCCCTCGGTGGGCACAGGGCCAGCCACAAGAAGCCCAAACTAGAGGGGAAGATTCTGAGGTTGGGGAACAAGCCCAAAACGCACGACTGCTCCATTTGCGGTCAGCGATTCTCTTTGGGCCAGGCATTGGGAGGACACATGAAGAGGCACAGAGTTGCCAACAATGAAGGCGACATTTCTTCGATCAATGAGGCTGAGGTTGTTGCAAAAGTACCGGTTGTTAAAAGGTCCAATAGTACGAGAGTTTTGTGCTTGGACTTGAACTTGACTCCTCTTCAGAATGACCTCAACTTGTTGTTTGGAGACAAGGCACCCATACTTGTTGATTTATTCACATGA 495 0.4889 MKRLREGVANIDLGNCLMLLAQSQPRESKPQKLLGPVEFECRTCNRKFSSFQALGGHRASHKKPKLEGKILRLGNKPKTHDCSICGQRFSLGQALGGHMKRHRVANNEGDISSINEAEVVAKVPVVKRSNSTRVLCLDLNLTPLQNDLNLLFGDKAPILVDLFT 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00915 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Cca02g00915 164 Pfam C2H2-type zinc finger 80 103 - -
Cca02g00915 164 Pfam C2H2-type zinc finger 39 64 - -
Cca02g00915 164 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Cca02g00915 164 SUPERFAMILY beta-beta-alpha zinc fingers 39 102 IPR036236 -
Cca02g00915 164 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Cca02g00915 164 SMART c2h2final6 80 102 IPR013087 -
Cca02g00915 164 SMART c2h2final6 39 61 IPR013087 -
Cca02g00915 164 Gene3D Classic Zinc Finger 37 102 - -
Cca02g00915 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Cca02g00915 164 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Cca02g00915 164 PANTHER ZINC FINGER PROTEIN ZAT5 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00915 Cca-Chr2 24923576 24924295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00915 1 162 C2H2 Transcription Factor Family AT2G37430 46.154 3.30e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00915 zf-C2H2_6 8.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00915 - - gmx:100793243 228.409