Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00914 ATGAAGAGAGAAAGAGAAAAGGAAGGAACAACGTTAGAAAGCTGGGACGTGACAAACTGTGCCATGACGCCTCATGCAAGTGTGTCCACAAACCCTCAAGTTTTTGAATGCAAAACGTGCAACCGCAAATTCTCGTCGTTTCAAGCACTGGGTGGCCACAGAGCTAGCCACAAGAGGGTGAGGCTCGGAGGGGAAGAACAACTCGGAGCAGGGGCTAAATCTATGGGCCTGAGTGGGCCCAAAATGCACGAGTGCTCCATTTGTGGTCAGGGTTTCCTTATGGGCCAGGCCCTCGGAGGACACATGAGAAGGCACAGAGACAGAGGTGCAACCAACAAAGCGTTTTCTTCCATAAACGAGGTTGTTGCAAAAGTTTCGGTATTCAAGAGATCGTGCAATGCCAAGGTTTTCTGCTTGGACCTCAACTTAACTCCTCTCGAGAATGATTTCAAGTTATTGTTGTTCGGGAAAGTGTCGCCTAAAGTTAATCTTTCCTCCTTCTGA 504 0.4841 MKREREKEGTTLESWDVTNCAMTPHASVSTNPQVFECKTCNRKFSSFQALGGHRASHKRVRLGGEEQLGAGAKSMGLSGPKMHECSICGQGFLMGQALGGHMRRHRDRGATNKAFSSINEVVAKVSVFKRSCNAKVFCLDLNLTPLENDFKLLLFGKVSPKVNLSSF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00914 167 Pfam C2H2-type zinc finger 34 59 - -
Cca02g00914 167 Pfam C2H2-type zinc finger 83 107 - -
Cca02g00914 167 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Cca02g00914 167 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Cca02g00914 167 SMART c2h2final6 83 105 IPR013087 -
Cca02g00914 167 SMART c2h2final6 35 57 IPR013087 -
Cca02g00914 167 Gene3D Classic Zinc Finger 33 105 - -
Cca02g00914 167 SUPERFAMILY beta-beta-alpha zinc fingers 34 105 IPR036236 -
Cca02g00914 167 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 23 162 - -
Cca02g00914 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Cca02g00914 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Cca02g00914 167 PANTHER ZINC FINGER PROTEIN ZAT5 23 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00914 Cca-Chr2 24898470 24899187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00914 1 164 C2H2 Transcription Factor Family AT2G37430 42.697 3.81e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00914 zf-C2H2_6 2.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00914 - - gmx:100796348 231.106