Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00913 ATGGCAGTAGCAACGTTGAagagagagagagagagagagagcatagagTTGGCACAGAGTCTGATGCTACTTTCTCAAACCAAAAAACCTCTGCTCGACACTTTGGCTCCGGCGGAGTTCGAGTGCAAGACATGCAAGCGCAAGTTCTCGTCGTTCCAGGCCCTCGGCGGCCACCGGGCCAGCCACAAGAAGCCCAGGTTGGAAGCGGAAGAGGAGAAGGGCCCGAGGAGGCAGCCCAAAATGCACGAGTGCTCCATCTGCGGCATGGAGTTCGCTTTGGGCCAGGCCCTGGGTGGGCACATGAGAAAGCACAGAGGTGCCGTCGCTGATAACAACGAAGGCGTCATCGAGAAAGTTCCGGTTCTGAAACGGTCCAACAGCAAGAGGGTGCTTTGCTTGGACTTGGATCTCAACTTGACGCCTTTGGAAAATGATCTCAAGTTGTTGTTTGGAAACAAGGCACCTAGGGTCGATCTTTCCTTATTCTAA 489 0.5092 MAVATLKRERERESIELAQSLMLLSQTKKPLLDTLAPAEFECKTCKRKFSSFQALGGHRASHKKPRLEAEEEKGPRRQPKMHECSICGMEFALGQALGGHMRKHRGAVADNNEGVIEKVPVLKRSNSKRVLCLDLDLNLTPLENDLKLLFGNKAPRVDLSLF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00913 162 PANTHER ZINC FINGER PROTEIN ZAT5 7 156 - -
Cca02g00913 162 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 7 156 - -
Cca02g00913 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Cca02g00913 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Cca02g00913 162 MobiDBLite consensus disorder prediction 61 80 - -
Cca02g00913 162 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Cca02g00913 162 Gene3D Classic Zinc Finger 38 106 - -
Cca02g00913 162 MobiDBLite consensus disorder prediction 56 80 - -
Cca02g00913 162 Pfam C2H2-type zinc finger 40 65 - -
Cca02g00913 162 Pfam C2H2-type zinc finger 82 106 - -
Cca02g00913 162 SMART c2h2final6 82 104 IPR013087 -
Cca02g00913 162 SMART c2h2final6 40 62 IPR013087 -
Cca02g00913 162 SUPERFAMILY beta-beta-alpha zinc fingers 40 104 IPR036236 -
Cca02g00913 162 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00913 Cca-Chr2 24893325 24894012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00913 6 161 C2H2 Transcription Factor Family AT2G37430 44.382 6.94e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00913 zf-C2H2_6 1.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00913 - - gmx:100778467 224.942