Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00906 ATGGCGAGGATAAAGGTGTACGAGCTGAGGAACAAGACTAAGGCGGAGCTCGCTCTCCTCCGAGTCGCCAAAGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAAATCAAGGTGGTGAGGCTCTCGATAGCGCAGGTTTTGACGGTTATTTCGCAAAAGCAGAAAGCGGCGCTCAGAGAGGCGTACAAGAATAAGAAGTATTTGCCCCTTGACCTCCGTCCCAAGAAGACTCGCGCCATTCGCAGACGCCTCACCAAACACCAGGCATCATTGAAGACAGAACGGGAGAAGAAGAAGGAGTTGTACTTTCCCCTAAGGAAGTATGCGATCAAAGTTTAG 339 0.5251 MARIKVYELRNKTKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYAIKV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00906 112 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 112 - -
Cca02g00906 112 CDD Ribosomal_L29_HIP 7 53 - -
Cca02g00906 112 PANTHER 60S RIBOSOMAL PROTEIN L35 1 112 IPR045059 GO:0000463|GO:0022625
Cca02g00906 112 Gene3D - 1 66 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cca02g00906 112 Pfam Ribosomal L29 protein 10 53 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca02g00906 112 TIGRFAM L29: ribosomal protein uL29 11 53 IPR001854 GO:0003735|GO:0005840|GO:0006412
Cca02g00906 112 Gene3D - 67 112 - -
Cca02g00906 112 SUPERFAMILY Ribosomal protein L29 (L29p) 4 54 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00906 Cca-Chr2 24773432 24774766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00906 1 112 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 84.553 5.23e-66 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00906 K02918 - gmx:100778013 202.986