Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00904 ATGGGTAACGCTCATCGACACGGACATCGCAAACACCACAATTCCCTCCCTCACAACACGCTTCCTCCGCCGCATAAATACGGTCCTCACCCACCGTTCCCACCCACCTCCAGTTCCAACATGCTCTCCCTGCCTTACGCCCACGCCGACACCACTCTCCGCTCCCTCGCCGCCCAAGCCGAGGGCTTCGGCCGTAACGCCGTCGGCGGCCTCCACGGTCCCCTTCACCACGTCACATCTCTCGCAGATGATGGACCGGGTTCGCTGCGTGACGCGTGTCGCCGGAAGGAACCTTTGTGGATCGTGTTTGAGGTTTCCGGCACTATTCACCTCTCTTCCTACTTGAGCGTGTCGTCTCACAAGACCATCGATGGTCGCGGCCAGAGGATTAAACTCAGTGGAAAAGGTTTGCGCCTCAAGGAATGCCAACACGTCATAATTTGCAATTTGGAGTTTGAAGGAGGCAGAGGGAGTGACGTTGATGCCATTCAGATCAAACCTAATTCCAGCCACATATGGATTGACCGTTGCACGCTTTCTGATTTTGATGATGGCCTTATCGACATCACCCGAGAAAGCACATACATTACTATTTCAAGGTGTCACTTTCTTCAGCATGACAAAACTATGCTAATTGGGGCTGATCCCTCGCATGTTGGAGATAGGTGCATGAGGGTCACCATACACCATTGTTTCTTCAATGGGACTCGACAGAGGCACCCCCGTGTTAGGTTCGCAAAAGTGCATATGTACAATAATTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGGCAGAAGAAGGTGGCATTTAAGTACCTTACGGAGAAGGCAGCAGACAAGGAAGTGGGAACAACTGGTCTCATAAGGTCTGAAGGAGACTTGTTCTTAAATGGTGCTCAACCAGGGTTGACTGAGGATAATGGGTGCAACATGTTTCACCCCAGTGAACACTATCCCTCGTGGACACTGGGAGCCCCTACAGATGATCTAAAACAGATTCTTCACCACTTCACTGGATGGCAATCTATTGCTAGGCCAGCAGATGAAACGTTATGCTCAGAATAG 1116 0.5045 MGNAHRHGHRKHHNSLPHNTLPPPHKYGPHPPFPPTSSSNMLSLPYAHADTTLRSLAAQAEGFGRNAVGGLHGPLHHVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQRIKLSGKGLRLKECQHVIICNLEFEGGRGSDVDAIQIKPNSSHIWIDRCTLSDFDDGLIDITRESTYITISRCHFLQHDKTMLIGADPSHVGDRCMRVTIHHCFFNGTRQRHPRVRFAKVHMYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGTTGLIRSEGDLFLNGAQPGLTEDNGCNMFHPSEHYPSWTLGAPTDDLKQILHHFTGWQSIARPADETLCSE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00904 371 Pfam Pectate lyase 115 277 IPR002022 -
Cca02g00904 371 Gene3D - 46 351 IPR012334 -
Cca02g00904 371 PANTHER PECTATE LYASE 18-RELATED 38 363 IPR045032 GO:0030570
Cca02g00904 371 MobiDBLite consensus disorder prediction 22 38 - -
Cca02g00904 371 MobiDBLite consensus disorder prediction 1 41 - -
Cca02g00904 371 SMART amb_all 86 284 IPR002022 -
Cca02g00904 371 MobiDBLite consensus disorder prediction 1 16 - -
Cca02g00904 371 PANTHER PECTATE LYASE 38 363 - -
Cca02g00904 371 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Cca02g00904 371 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Cca02g00904 371 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Cca02g00904 371 SUPERFAMILY Pectin lyase-like 59 366 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00904 Cca-Chr2 24725057 24728236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00904 41 365 Polysaccharide Lyase AT3G09540 68.615 3.17e-167 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00904 K01728 - gmx:100814368 672.159