Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00890 ATGGAAGAAACAACATCAACTATCATCATGGCTGCACTCTCCACCCTCACCCCTCCCCAATTCTCCGATCTCACCCACTCCATTCTCTCCGCCACCCACCACCACCGCCGCCGCCTCGCCGCCCTCCTCTCTTCCCCCACGCTCTTCTCTCTAACCCTCCACCACCTCCACACACTCTCCCTCCCCCAGAAGACCCTCATCGTCGCCCGCCACCTCCTCTCCTCCCTCCACCTCCTCGTCGCCACGTCGCCGCCCCCCTCCACCGCCACCCGGCAGCGCGACCTCGACGCCGCCCTGCTCCTCCTCCTCCTCTGCGAAACGCACAACCACAACCCGGAAGCCCTCGACGCACCCTTCTCCGAATGGAGAAGAAACCTAAGCAACCTCTTCACTTATTCATTGCTGACTCTTTCTCTTGCACCCGTTGGGACCTGCCCGGGAACGGTTTTGATTCCCTTTGTTGAGACGGTGACGCGGTGCTGGAGACTCGTCAGCGCGCTGGACTgcggcggcgggaaggaagtgggggaggtggcggcgtcggccgccacggtggtggcTCTGCCGTCTGTGGAGGTGAGAAACGGTGGGAGGGAGTGCGTTATATGCAAAGAGGAGATGGGAATAGGGAGGGACGTGTGTGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATTTTACCCTGGCTGGGAAAGAGGAACACGTGTCCTTGCTGCAGGTTTAGGTTGCCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGAAATCTTGGTTAAAATGGGTGCAAAAGAATAA 804 0.5398 MEETTSTIIMAALSTLTPPQFSDLTHSILSATHHHRRRLAALLSSPTLFSLTLHHLHTLSLPQKTLIVARHLLSSLHLLVATSPPPSTATRQRDLDAALLLLLLCETHNHNPEALDAPFSEWRRNLSNLFTYSLLTLSLAPVGTCPGTVLIPFVETVTRCWRLVSALDCGGGKEVGEVAASAATVVALPSVEVRNGGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEILVKMGAKE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00890 267 SMART ring_2 200 240 IPR001841 -
Cca02g00890 267 Pfam Ring finger domain 199 241 IPR001841 -
Cca02g00890 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 264 - -
Cca02g00890 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 264 - -
Cca02g00890 267 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Cca02g00890 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 247 IPR013083 -
Cca02g00890 267 SUPERFAMILY RING/U-box 196 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00890 Cca-Chr2 24437816 24439295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00890 1 262 C3H Transcription Factor Family AT5G02750 52.708 1.17e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00890 - - pvu:PHAVU_007G161400g 431.409