Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00887 ATGATGGTTAGATCGTGTTGGAAGCCAATTGCTGATGGTGATGAAGGAGATGGGAGTGGGAGAGTTGATGGACTTCTTTGGTACAAGGATTTAGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTGGTTCAGGCCAATAGTTCATTAGAGGATCGAAGTGAACTTGAGTCTGGACCCTTGAGTTCCAACCACTCGGGTCCTCTAGGAACCTTTATAGGTGTTTATGATGGCCATGGTGGAAACGAGGCATCACAGTTTGTTAGTGACAATCTCTTCTGCAATCTCAAAAGGCTTGCAGCTGAACATCAAGGTATGTCAGAAAGTGTTCTCAAAAAGGCATATTCAGCAACAGAGGAGGGTTTTCTATCTCTTGTGAAGAAACAGTGGCTGAGTAAGCCACAGATTGCATCCACAGGCACTTGTTGTTTGGTGGGGGTGATTTGCAATGGCATGATATATATTGCAAACTCTGGAGACTCCCGGGTGGTGTTAGGAAGATTAGAGAGAGCAACAAGGGAAACAGAAGCTTTACAACTATCTACAGAACACAATGTTAACCAAGAAACAGTGAGAGATGAAATTCGGTCAAAGCATCCCTTTGATTCACAAATCGTGGTTATGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCCATTGGGGATGCATATCTGAAGAAAGCAGAATTTAACAGGGATCCTCTACCATCCAAGTTCAGACTAGCAGAAACATTCTTCAAGCCAATTCTTAGTTGTGAGCCATCAACATCATCCCACGTACTCCATCCTGATGATCAATTTCTCATATTTGCTTCTGATGGTTTATGGGAGCATGTTACCAACCAAGAGGCTGTTAACATAGTCAGCAATAACCCACCTAACGGAATTGCCAGAAGACTTGTGAAAGCTGCACTTAGAGAAGCGGCTAAGAAGTGTGAAATGAGACTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGGAGACACATCCATGATGATATAACAGTGATTGTGGTGTTTCTAAATTCCAAACTCACTGAGAATACCTCTCTCTGTGGTTCTCCTCTTTCAATCAAGGGAGGTGGGTCTGCCAATTCCTAG 1116 0.4346 MMVRSCWKPIADGDEGDGSGRVDGLLWYKDLGNHLYGEFSMAVVQANSSLEDRSELESGPLSSNHSGPLGTFIGVYDGHGGNEASQFVSDNLFCNLKRLAAEHQGMSESVLKKAYSATEEGFLSLVKKQWLSKPQIASTGTCCLVGVICNGMIYIANSGDSRVVLGRLERATRETEALQLSTEHNVNQETVRDEIRSKHPFDSQIVVMRQNVWRVKGLIQVSRSIGDAYLKKAEFNRDPLPSKFRLAETFFKPILSCEPSTSSHVLHPDDQFLIFASDGLWEHVTNQEAVNIVSNNPPNGIARRLVKAALREAAKKCEMRLSDLQKIEQGMRRHIHDDITVIVVFLNSKLTENTSLCGSPLSIKGGGSANS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00887 371 CDD PP2Cc 36 346 IPR001932 -
Cca02g00887 371 SUPERFAMILY PP2C-like 47 347 IPR036457 -
Cca02g00887 371 Gene3D - 29 355 IPR036457 -
Cca02g00887 371 ProSiteProfiles PPM-type phosphatase domain profile. 35 346 IPR001932 -
Cca02g00887 371 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 369 - -
Cca02g00887 371 Coils Coil 307 327 - -
Cca02g00887 371 Pfam Protein phosphatase 2C 56 315 IPR001932 -
Cca02g00887 371 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Cca02g00887 371 SMART PP2C_4 32 344 IPR001932 -
Cca02g00887 371 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00887 Cca-Chr2 24404382 24406575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00887 2 367 PP2C-type Phosphatase Gene Family AT3G12620 64.499 4.55e-179 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00887 K01102 - gmx:100819870 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02329 03 44273081 44275401 Cca02g00887 02 24404382 24406575 PCT