Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00882 ATGGGTTGGATTCCCTGTTCTGGAAGTTCAAACACTAAGAAGAAGTTGAAGAAGAAGTTGGAAGTGCAGGACAGCCTCGTTGATCCGATCAAAGCCACCCCAGGGAAATTGAAGAGGAATGCATCCATAAATTCGAAAGATTCTTCTAAAAATGGAAACACTGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAACTTTAGAGCCGAATGTCTTTTGGGCGAGGGAGGCTTTGGAAGAGTATACAAGGGGCGTTTGGAAAATATTAATCAGATTGTTGCAATTAAACAACTTGACCGAAATGGGCTCCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGGGATCAAAGGCTTCTAGTTTATGAATATATGTCACTGGGATCCTTGGAAGACCACTTACATGATATTTCTCCTGGCAAGAAACGACTTGACTGGAACACACGAATGAAAATAGCTGCTGGGGCAGCAAGGGGATTGGAATATCTACATGACAAAGCTAATCCTCCTGTCATATATCGAGATTTAAAGTGCTCCAACATTTTGCTTGGGGAAGGATATCATCCAAAGTTATCTGATTTTGGTCTGGCTAAACTTGGCCCGGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGGTATTGTGCTCCAGAATATGCAATGACTGGTCAATTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTCAAAGATAGAAGGAAGTTTTCGCAAATGGCCGATCCAATGCTACAGGGTCAGTATCCTCCAAGAGGGCTATACCAGGCCCTTGCTGTTGCGGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGAGTTACCTTGCTTCACAAAAATATGACCCCAATACACAGACAGTGCAAAGCTCTCGCCTTGCTCCTGGTACTCCTCCTAGAACCAAGAGGGGACAGTGA 1143 0.4374 MGWIPCSGSSNTKKKLKKKLEVQDSLVDPIKATPGKLKRNASINSKDSSKNGNTDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHDISPGKKRLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTQTVQSSRLAPGTPPRTKRGQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00882 380 Pfam Protein tyrosine and serine/threonine kinase 78 347 IPR001245 GO:0004672|GO:0006468
Cca02g00882 380 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Cca02g00882 380 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Cca02g00882 380 SMART serkin_6 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00882 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Cca02g00882 380 SUPERFAMILY Protein kinase-like (PK-like) 55 348 IPR011009 -
Cca02g00882 380 PIRSF ILK 26 362 - -
Cca02g00882 380 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 378 - -
Cca02g00882 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Cca02g00882 380 PANTHER OS07G0668900 PROTEIN 1 378 - -
Cca02g00882 380 CDD STKc_IRAK 80 348 - -
Cca02g00882 380 MobiDBLite consensus disorder prediction 361 380 - -
Cca02g00882 380 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00882 Cca-Chr2 24335719 24339620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00882 28 353 Glycoside Hydrolase AT3G07070 68.405 1.40e-166 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca02g00882 PK_Tyr_Ser-Thr 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00882 - - gmx:100776041 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02334 03 44295295 44298570 Cca02g00882 02 24335719 24339620 PCT