Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00880 ATGACAAGGGTTGTCCAGATGAGTGTCGATGGCGACAGCAAAGAGCTGAAAGAACTGAATCAGCGCTTACGAGATGGGAAGAAGGTTTCTGGTGGGGAGCATGGTTTATGTGAGGGCAATGAAGTGAAATGTAATGGAGTAGCTGAAGAAGTTAAGGTTGGACAGGGGGGGACTGTGGAATCCTCCTCTGTCCAGCAGAATATACCACAGCCTCAAGGGGCAATAATTTGTTGGGAGAGGTTTTTGCATGTTAGATCCCTTAAGGTATTGCTTGTGGAGTATGATGACTCTACCCGCCATGTTGTCACTGCACTGCTTTGCAATTGTAGTTATGAAGTTATTGAAGCAGCAAACGGAGTGCAAGCTTGGAAGATATTGGATGATTTAACCAATCATATTGACCTCGTTTTAACTGAGGTGGCAATGCCTGGCTTAACAGGCATTGGTCTTCTATACAAGATCATGGGCCACAAGACCCGGAAAAATATTCCAGTAGTTATGATGTCATCTCATGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGCAGTGGCAGTGAAAGTGGCACCCAAACCCAGAAGTCTGTAAAATCAAGGAGCCTTGAAAAGTCTGATAATAATTCTGGAAGCAATGATGAAGATGATCATGGCAGTGTAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCATGGACCAAACGTGCTATAGAAGTTGATAGTCCCAAACCAGTCTCTCAGTGGGATCAAATAGCTGAGTGCCCTGACAGTACCTGTGCTCAAGTTGTTCACTCCAATGCTGAAATAGGTGGGAACAAGGTGGTTCCTATAGCCGCAAAGGAGTGTCCAGAACAGAAGGAACAACTTGTCAAAACTGCAGGTTCTAAACATAGCAATGCACCTGATGTCAGCCCCTCTAAATTCAATGAGCAAATTAATAGAGGACAACTGGACGTTAACTGTGAAAATCAATCTAGCAAGCTAAGGTGCAAAGGTTTATCATTGTCCGATGCCATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGAATTTGAAGCCCTAAATAGAAGACCCAAATCCTCAGATATTGAAAATAAAGGTACTAATAATGATGAAGATTTGCCATCTCTTGAGCTCAGTTTAAAGAGGCTTAGAGGAGTTAAAGATGCTGGCATTACAATTCAGGATGAACGGAATGTTTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACACTAAGAAGTCTCCCACTGGATGTGTTGGAAGCAATTCTCCACATAATAATAGCTTAGAAGTTACAAAGAAAGATTCGTCTCGTGATCTTCAATCTCATTCTAGCGGCAATCCACCTAACCAAACCTCAAATGGTGCTAGCAATAACAATGATACGGGTTCCACTACTAATAATGCTTTCGCTAAATCTGCAGTTGTAAGTGAGCCAGCAGTGGCATCAACAACTAAATGCTTGTACCAAACATCTTCTTTCCAGCCTATGAAAAACAACCTTGTTTGTACCTCTCAACAAGTTGTCTTACATAATACTAAAGATACGACAGCAACAATGTTAGCACCACCTAAAGTAGACAGACATAAAGATTCTGCAGCTCTGGAATTCCATCTCCATTGTGAAAACCATAACTGTATTGCTGACAACATGCAGCACCAGCTGCCACCTGATCATGATGCTGAATCTGTAAAGAAAATGGCTATTGCTGCTCCACATTGTGGGTCATCAAATGTGGTTGAACTGCTAGTTGAAGGTAATGTTGGAAACCACAGTATCAATAGAAGTGTTTCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCACAGCAGTTAATGCTGGAGGGACAAACATGGAAAGCAACAATAGACTCACCGGAAATagtggcagtggtgatgctagtggaagtggaagtgCCAACAAAGTAGAACCAAACAAGACTACTCAAAGGGAAGCAGCCTTGACTAAATTTCGCCAAAAGAGAAAAGAGAGAAAGGAGAGGTGTTTCCATAAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAACAACGACCTCGATTTCGTGGACAATTTGTGCGACAGTCCTCTAATGAAAATGCAAGTGAAGCAACAGATAGCTGA 2265 0.4159 MTRVVQMSVDGDSKELKELNQRLRDGKKVSGGEHGLCEGNEVKCNGVAEEVKVGQGGTVESSSVQQNIPQPQGAIICWERFLHVRSLKVLLVEYDDSTRHVVTALLCNCSYEVIEAANGVQAWKILDDLTNHIDLVLTEVAMPGLTGIGLLYKIMGHKTRKNIPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSRSLEKSDNNSGSNDEDDHGSVGLNNGDGSDNGSGTQSSWTKRAIEVDSPKPVSQWDQIAECPDSTCAQVVHSNAEIGGNKVVPIAAKECPEQKEQLVKTAGSKHSNAPDVSPSKFNEQINRGQLDVNCENQSSKLRCKGLSLSDAITSTSDSQMHSGEFEALNRRPKSSDIENKGTNNDEDLPSLELSLKRLRGVKDAGITIQDERNVLRRSDQSAFSRYNAASNTKKSPTGCVGSNSPHNNSLEVTKKDSSRDLQSHSSGNPPNQTSNGASNNNDTGSTTNNAFAKSAVVSEPAVASTTKCLYQTSSFQPMKNNLVCTSQQVVLHNTKDTTATMLAPPKVDRHKDSAALEFHLHCENHNCIADNMQHQLPPDHDAESVKKMAIAAPHCGSSNVVELLVEGNVGNHSINRSVSGSNNGSNGQNGSSTAVNAGGTNMESNNRLTGNSGSGDASGSGSANKVEPNKTTQREAALTKFRQKRKERKERCFHKKVRYQSRKKLAEQRPRFRGQFVRQSSNENASEATDS 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00880 754 MobiDBLite consensus disorder prediction 387 411 - -
Cca02g00880 754 MobiDBLite consensus disorder prediction 244 267 - -
Cca02g00880 754 Pfam Response regulator receiver domain 89 200 IPR001789 GO:0000160
Cca02g00880 754 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 28 731 - -
Cca02g00880 754 MobiDBLite consensus disorder prediction 211 228 - -
Cca02g00880 754 ProSiteProfiles Response regulatory domain profile. 88 206 IPR001789 GO:0000160
Cca02g00880 754 MobiDBLite consensus disorder prediction 211 267 - -
Cca02g00880 754 Gene3D - 86 244 - -
Cca02g00880 754 SMART REC_2 87 202 IPR001789 GO:0000160
Cca02g00880 754 MobiDBLite consensus disorder prediction 485 511 - -
Cca02g00880 754 ProSiteProfiles CCT domain profile. 700 742 IPR010402 GO:0005515
Cca02g00880 754 MobiDBLite consensus disorder prediction 737 754 - -
Cca02g00880 754 MobiDBLite consensus disorder prediction 441 511 - -
Cca02g00880 754 CDD psREC_PRR 89 192 - -
Cca02g00880 754 MobiDBLite consensus disorder prediction 707 725 - -
Cca02g00880 754 MobiDBLite consensus disorder prediction 442 474 - -
Cca02g00880 754 SUPERFAMILY CheY-like 85 211 IPR011006 -
Cca02g00880 754 MobiDBLite consensus disorder prediction 637 754 - -
Cca02g00880 754 MobiDBLite consensus disorder prediction 377 411 - -
Cca02g00880 754 MobiDBLite consensus disorder prediction 637 699 - -
Cca02g00880 754 Pfam CCT motif 697 742 IPR010402 GO:0005515
Cca02g00880 754 MobiDBLite consensus disorder prediction 229 243 - -
Cca02g00880 754 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 731 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00880 Cca-Chr2 24259663 24282659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00880 163 744 Response Regulator Gene Family AT5G02810 47.520 7.28e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Cca02g00880 Response_reg 1.3e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00880 K12129 - gmx:100796933 1305.04