Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00877 ATGCCGCCTAAGCAGCAATCAAAAGCTGATTTAGCGAAGAAGCAGAAGATTGTAGAGGACAAAACCTTCGGCCTCAAGAACAAAAACAAGAGCAAAAATGTCCAGAAATACGTCCAGAATCTCAAGCAGTCCGTGCAGCCCAGACCCGATCCCACCAAAGTCGATGCAAAGAAAAagaaggaggaggagaaggccaaggagaaggagCTGAATGATTTGTTCAAAATCGCTGTTACTCAGCCTAAAGTTCCAGTTGGTGTTGATCCCAAGTCCATACTATGTGAGTTTTATAAAGTGGGGCAGTGTGCCAAGGGATTTAAATGCAAGTTCTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGCGATAAGCGTGACCAGGGCACGATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAACCGAGTATAACCAGAATAAACCAACTGACATAGTCTGTAAATACTTTTTGGATGCCGTAGAAAAGAAGCAATATGGTTGGTTTTGGGACTGCCCCAATGGTGGCAAGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATATTTTGAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAAGTGAAAAAATATCAATCGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGACAACTACAACTCCTATGACTCCTGAGTTATTTTCTGAATGgaagaagaagaagatagaagaaAGAGATGCCAATTTAGCTGCACAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGGGAGCTATTTTTGTCGAATGCTAGCTTGTTTGTGGATGATGCAGAGGCATATGAAAAGTACCAGAGAGAACCAGAATCTGATGAAACTGAACAGAATGGGAATGGGAATGCTGCTGAAGATGGACCCAGCACCTCAGCAACAGCtggtgatgatgacatagatgttgatgatgacgatgaGTTGGACATGGATGAGTTAAATGAACTGGAAGCAAGCTTATCCAAGACATCGATCCAAATAAAGGAAACAGGAGCTGAAGCTTAA 1077 0.3937 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRPDPTKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSILCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQGTMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWDCPNGGKNCHYRHALPPGYILKSQMKALLEEESEKISIEEEIENQRAKVTTTTPMTPELFSEWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYEKYQREPESDETEQNGNGNAAEDGPSTSATAGDDDIDVDDDDELDMDELNELEASLSKTSIQIKETGAEA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00877 358 Coils Coil 53 73 - -
Cca02g00877 358 Coils Coil 246 266 - -
Cca02g00877 358 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Cca02g00877 358 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 357 - -
Cca02g00877 358 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 357 - -
Cca02g00877 358 Pfam DRG Family Regulatory Proteins, Tma46 215 300 IPR032378 -
Cca02g00877 358 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Cca02g00877 358 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Cca02g00877 358 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Cca02g00877 358 MobiDBLite consensus disorder prediction 321 338 - -
Cca02g00877 358 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Cca02g00877 358 Coils Coil 208 228 - -
Cca02g00877 358 Coils Coil 337 357 - -
Cca02g00877 358 Gene3D - 87 203 - -
Cca02g00877 358 MobiDBLite consensus disorder prediction 289 358 - -
Cca02g00877 358 MobiDBLite consensus disorder prediction 40 63 - -
Cca02g00877 358 Gene3D - 204 279 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca02g00877 DFRP_C 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00877 - - gmx:100778701 630.557