Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00876 ATGGCCGCACGACCTCTTGTCACCGTGCAATCCCTCGAGGGCGACATGGCCACCGACGCCCCCGCCACTCTCCCCATCCCCGATGTCATGAGGGCCCCCATCCGTCCCGACATCGTCAACTTCGTCCACTCCAACATCTCCAAAAACAGCCGCCAGCCCTACGCCGTCTCCCGCCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGAACCGGCCGCGCCGTCTCCCGTATCCCCCGCGTCCCCGGCGGCGGCACCCACCGCGCCGGCCAGGGAGCCTTCGGCAACATGTGCCGCGGCGGCCGCATGTTCGCCCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGCTACGCCGTGGTCTCCGCCATCTCCGCCTCCGCCATCCCCTCTATCGTCTTCGCCCGCGGCCACCACATTGAGTCCGTCCCTGAGCTCCCCCTCGTCGTGAGCGATTCCGTCGAAGGTGTCGAGAAAACGAAGGAGGCCATCAAAGTCCTGAAGCAGATCGGAGCCTACCCTGACGCGGAGAAGGCCAAGTTGAGCCACGGCATTCGCCCCGGCAAGGGAAAGATGCGTAACCGCCGCTACATTTCCCGTAAGGGCCCTCTTATCATTTACGGAACGGAAGGTGCTAAGGTCGTTAAGGCCTTCCGCAATGTTCCCGGCGTTGAAGTGGCTAACGTGGAGAGGCTTAACCTTCTGAAGCTGGCTCCTGGTGGGCACCTCGGGAGGTTTGTGATCTGGACCAAGTCTGCTTTTGAGAAGCTGGACTCTATCTATGGGACCTTCGACAAGCCCTCTCACAAGAAGAAGGGCTACGTGCTACCCAGGCCCAAGATGCTGAACGCCGACCTCGCTAGGATTATTAACTCCGATGAGGTTCAGTCTGTCGTCAGGCCCATTAAGAAGGACCTGAAGCGGGCCACTCTTAAGAAGAATCCTCTTAAGAACCTCAATGTTATGCTTAAGCTCAATCCCTATGCCAAGACTGCTAAGAGGATGTCTCTGCTCGCTGAGGCCCAGAGGGTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGCTGTCTAAGGAGGAAGCTTCGGCCATCCAAGCTGCTGGAAAAGCATGGTATCACACTATGGTGTCAGATTCTGATTATACAGAATTTGACAACTTCTCAAAGTGGTTGGGTGTTTCACAGTAA 1209 0.5856 MAARPLVTVQSLEGDMATDAPATLPIPDVMRAPIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAISASAIPSIVFARGHHIESVPELPLVVSDSVEGVEKTKEAIKVLKQIGAYPDAEKAKLSHGIRPGKGKMRNRRYISRKGPLIIYGTEGAKVVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGTFDKPSHKKKGYVLPRPKMLNADLARIINSDEVQSVVRPIKKDLKRATLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLDKKRKLSKEEASAIQAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00876 402 Coils Coil 340 367 - -
Cca02g00876 402 MobiDBLite consensus disorder prediction 52 94 - -
Cca02g00876 402 PANTHER 60S RIBOSOMAL PROTEIN L4 2 402 IPR045240 -
Cca02g00876 402 Pfam Ribosomal protein L4/L1 family 26 264 IPR002136 GO:0003735|GO:0005840|GO:0006412
Cca02g00876 402 Pfam 60S ribosomal protein L4 C-terminal domain 278 350 IPR025755 -
Cca02g00876 402 ProSitePatterns Ribosomal protein L1e signature. 118 144 IPR013000 -
Cca02g00876 402 PANTHER BNAC03G35890D PROTEIN 2 402 - -
Cca02g00876 402 Gene3D - 1 306 IPR023574 GO:0003735|GO:0005840|GO:0006412
Cca02g00876 402 SUPERFAMILY Ribosomal protein L4 7 265 IPR023574 GO:0003735|GO:0005840|GO:0006412
Cca02g00876 402 MobiDBLite consensus disorder prediction 52 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00876 Cca-Chr2 24167400 24169920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00876 2 402 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.793 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00876 K02930 - gmx:100779764 719.153