Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00873 ATGGTGGATACCAAATCTACTTGTTGGAAAAAGTACTCGTCTAAGGCTGAGAAAAATGAACTTAGAGATGAGAAACAGAGGCTCAAGGCAGAAAAAGAGAAGTTGGAGCAGCAACTGAAATCATTAAATGCCCAACCTAGTTTCATGCCTCCCCCTGCTGCAATCCCGGCCGCAGCATTTGCGGCACAAGGCCAAGCCCACGGCAACAAGCTGGTTCCTTTTATCAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCTCCTGCTGCAGTGGATACCTCACAGGATCACGCTGAGAAAAATGAACTTAGAGATGAGAAACAGAGGCTCAAGGCAGAAAAAGAGAAGTTGGAGCAGCAACTGAAATCATTAAATGCCCAACCTAGTTTCATGCCTCCCCCTGCTGCAATCCCGGCCGCAGCATTTGCGGCACAAGGCCAAGCCCACGGCAACAAGCTGGTTCCTTTTATCAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCTCCTGCTGCAGTGGATACCTCACAGGATCACGTTCTCCGTCCACCAGTTGCCTAA 561 0.4848 MVDTKSTCWKKYSSKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00873 186 PANTHER TRANSCRIPTION FACTOR ILR3 15 97 - -
Cca02g00873 186 PANTHER TRANSCRIPTION FACTOR ILR3 98 186 - -
Cca02g00873 186 Coils Coil 11 45 - -
Cca02g00873 186 PANTHER BHLH TRANSCRIPTION FACTOR 15 97 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cca02g00873 186 PANTHER BHLH TRANSCRIPTION FACTOR 98 186 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cca02g00873 186 Coils Coil 93 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00873 Cca-Chr2 24132728 24134918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00873 15 97 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 78.571 5.46e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00873 - - gmx:100788858 138.272