Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00872 ATGTCTTGCAAGGCCCACTACTGGTGTACGGAATGGAAGGCGCGAACTGTGGAGAAACTAAACCTTCTGAAGCTCGCTCTTGGGGAACACATGGGAAGGTTTATTATCTGGACCAAGTTTGCTTTTCAGAAACTGAACACTATTTCTGGGTCGTTTGGAAAGGGGAAGAAGCTTGACAAGAAGAGAAAGAGGAAGATAGACCCTAAGGGGGGcttaggaattcctcctcctcctcctctgcttgttccagatccatctacatGTTATCATGTTACTCTACTTGTTGGAGGTGATGAAGGAGCAAGAATCCTTTGTTATCGGTGA 324 0.3858 MSCKAHYWCTEWKARTVEKLNLLKLALGEHMGRFIIWTKFAFQKLNTISGSFGKGKKLDKKRKRKIDPKGGLGIPPPPPLLVPDPSTCYHVTLLVGGDEGARILCYR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00872 107 PANTHER 60S RIBOSOMAL PROTEIN L4 17 57 IPR045240 -
Cca02g00872 107 PANTHER BNAC03G35890D PROTEIN 17 57 - -
Cca02g00872 107 MobiDBLite consensus disorder prediction 54 79 - -
Cca02g00872 107 SUPERFAMILY Ribosomal protein L4 12 47 IPR023574 GO:0003735|GO:0005840|GO:0006412
Cca02g00872 107 Gene3D - 10 69 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00872 Cca-Chr2 24106580 24110279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00872 17 72 Cytoplasmic Ribosomal Protein Gene Family AT5G02870 53.571 1.28e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00872 K02930 - psom:113310052 52.373