Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00870 ATGGGAGAAGAGGAAGGGAAGGGAAAGGTTAAGGAACGTGAAAGAAAAACGGACGGTGGCGATAGAACCGACActctgatctccatcgtctcctcactcgtctcttctccagcgttcatttctcCCGCCAATTACAAATCACATCACATCAAACATCAGGGTTCCGCCCACCATGTCCGATGCTCCGGCGGCGGCGGCGCCAGCCACGAGAGCGGCGACCACAGTCCGCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCTCCCAATGGTAAAATCGCCAAGGACGCCAAGGAAACCGTGCAGGAAGGCGTCTCCGAGTTCATTAGCTTCATCACCAGCGAAGCCAGCGATAAGTGCCAGAGAGAGAAGAGAAAGACCATTAACGGCGACGATTTGCTTTGGGCAATGGCCACTTTAGGTTTCGAGGACTATATTGATCCGCTCAAGATTTACCTCAAAACTTATAGAGATGTAATTTTAATTTACATTTTTTTTTATGAATTATGTGTAGTTTGTTCTTGCATAGTAAGTATACGATTGATGTTTAATTAA 594 0.4411 MGEEEGKGKVKERERKTDGGDRTDTLISIVSSLVSSPAFISPANYKSHHIKHQGSAHHVRCSGGGGASHESGDHSPRSNFREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQEGVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLKTYRDVILIYIFFYELCVVCSCIVSIRLMFN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00870 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 62 180 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca02g00870 197 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 62 180 - -
Cca02g00870 197 SUPERFAMILY Histone-fold 83 172 IPR009072 GO:0046982
Cca02g00870 197 Gene3D Histone, subunit A 73 173 IPR009072 GO:0046982
Cca02g00870 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 86 150 IPR003958 -
Cca02g00870 197 MobiDBLite consensus disorder prediction 49 80 - -
Cca02g00870 197 MobiDBLite consensus disorder prediction 1 22 - -
Cca02g00870 197 MobiDBLite consensus disorder prediction 1 23 - -
Cca02g00870 197 PRINTS CCAAT-binding transcription factor subunit A signature 152 170 - -
Cca02g00870 197 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Cca02g00870 197 PRINTS CCAAT-binding transcription factor subunit A signature 133 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00870 Cca-Chr2 24069604 24073262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00870 62 172 CCAAT-HAP3 Transcription Factor Family AT2G37060 81.416 9.22e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca02g00870 CBFD_NFYB_HMF 6.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00870 K08065 - gmx:100791435 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02343 03 44401236 44404339 Cca02g00870 02 24069604 24073262 PCT