Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00866 ATGGTTATTTATGGCCCAGTGGATCTTAACAGACCCAATAGTGTTTTTGATTTTGTCCACTATATAAACCCCCAATTTTTCATATCACGATTAGGGTTTTGTGCTGTTGCTGCTGCTCATCCTCCGCTACCTCCGAGCTCTGCACCGAAGAACGAAGCCATGGGGAAGACACGTGGAATGGGAGCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGGAATGAGTGGAAGAAACCTTTTGCCGGTTCTTCCCACGCAAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCTATCCGTAAGTGTGCTAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCTGCTTTTGTCCCAAATGATGGTTGCTTGAACTACATTGAAGAGAACGACGAAGTGTTGATAGCTGGATTTGGACGTAAAGGTCATGCTGTGGGTGATATTCCTGGTGTCAGATTTAAGGTTGTGAAGGTCTCTGGTGTCTCACTTCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCCTAA 588 0.4626 MVIYGPVDLNRPNSVFDFVHYINPQFFISRLGFCAVAAAHPPLPPSSAPKNEAMGKTRGMGAARKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00866 195 Pfam Ribosomal protein S12/S23 84 194 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca02g00866 195 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 45 195 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca02g00866 195 TIGRFAM uS12_E_A: ribosomal protein uS12 59 194 IPR005680 GO:0003735|GO:0006412|GO:0015935
Cca02g00866 195 SUPERFAMILY Nucleic acid-binding proteins 73 193 IPR012340 -
Cca02g00866 195 PANTHER BNACNNG03140D PROTEIN 45 195 - -
Cca02g00866 195 CDD Ribosomal_S23 79 192 IPR005680 GO:0003735|GO:0006412|GO:0015935
Cca02g00866 195 ProSitePatterns Ribosomal protein S12 signature. 112 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca02g00866 195 Gene3D - 78 195 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00866 Cca-Chr2 23992174 23994107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00866 54 195 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 3.17e-95 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00866 K02973 - rcu:8263368 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00866 02 23992174 23994107 Cca02g00866 02 23992174 23994107 ECH
Cca02g00866 02 23992174 23994107 Cca04g00736 04 7333145 7335805 ECH
Cca03g02346 03 44429410 44431275 Cca02g00866 02 23992174 23994107 PCT